NNTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCAAATTAGCTTTGTTTCGAAACTCCAAGGGTGATAAGTCA
AATGTTTGCAGCACACATTGCTATTTATTACCTTGCATTGACTGAAAATC
ATCTCTTCTGTCAACCCCAGGTAAATCATGTTACATGTTTCATAAAATAT
GAGACCTGGGTCTTTTCTGAAGATGCCACTTAGTGTGTGAACTTGCTGCC
TTTGGCTGAATCCTAGTTGCTGCAAACTCCCTCAAGACCACCACTTCTAG
AGTCCTGTGGCAGCTGAATGATAGAAGAAAAGGTATGTATAGAAAACAGA
TGCAAAAGGTTGAGAGCTCGTCCAGCTTTTAGTGCTCAGACTGACAGCTA
AATACAAATTGAGAAATGTAAGTTTCACTTTCAGCAAATTTACCTCATTT
TTTTCATTTCGTTTGAATACACTCACTGCTTCTCAGAGTATGCAACTTTA
CAGTGAGATATTCTTTATTCTTGAAGGCTCATTATTTTCCAGTGAGGTTA
CCGAACCTAGACTACGTAGTACAGATTACCCAGCATGGTATCAATCAAAA
ATATACGTGGCAAATGGGATTCCAAGCAGTGCCAAATAAGCATCTGCTTT
TAACAGAGAATGAAAAAAAAGCATTTAGTTCCTTTATTAACAGGTATTAT
GGGCAATTTATTTTTAAGCCATCTCAAAAACACATTTAAC

ATACAACCATATGAGAAGCCGGGCGCCGCCCGATTCCAAAAAAAGGNGAA
NCANAGATATTCCCAAAAAACACAGGACAGCAAGAAACCCTGTATTGAAA
AACTAAGGCGGGGTATGTCGGAAGAAAGGAAACAAGAAAAAAAAAAAACA
CATGTATTTAATCATCTAAGAGGGTGGGGTTTTATTCTCAGTTAAAACGA
AATCCCATAAGGTAAAACTAACATAAAGAGGCGCGTGACATAGTGTGTTT
GTAAACTCCATCCTCACATTTCTACTGAACCAAGTTTATGAAGGCTCGTC
TGGACCACAAACTGTTTTTTTTGTCTCTGATAAACGATTGAACACCTATA
CCACTATTTAATGCGCAATTCATTATAAATAATATTAACGCCTCCTCGCT
TACACTGCTCCTAATTCCTGTATTTCCATCTGCTGTTGCACCCCCACCCT
TAACTTTCATTCCCTGCGTTTCGCATTTTATTTATGAACGCACCTTTTAC
ACGCCCCACACGCTTTTTAATCATTCTCTTGTTATACGTCATCCTTTCTT
TTATATTCTCTTACAGCTACATATTTCTCTTTCCATCTCCTCGGCAAATC
TTAACCAACCCCTATTCACCATACATTCAAAGCAATAATTTACCCACCTT
ATAATCGCACCGCCCCTATGCACCCATTAATCTCCCCCCCTTAATTATTT
CCCCCATACGCCTAAATTGTGGATACCTTTGAATACATATTATATCTTCC
CTCTCTCTCAACCCTTCTTTCTACTTTCN

Query= MSMg01no402_h20.b1 MSMg01no402_h20.b1 CHROMAT_FILE:
MSMg01no402_h20.b1 PHD_FILE: MSMg01no402_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:23 2005
         (573 letters)



>mm_chr13_80624019_80624991
          Length = 973

 Score = 1021 bits (528), Expect = 0.0
 Identities = 562/580 (96%), Gaps = 11/580 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcaaattagctttgtttcgaaactccaagggtgataagtcaaatgtttgcagc 64
           ||||||||||||  || |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gaattcttcaaaagagttttgcttcgaaactccaagggtgataagtcaaatgtttgcagc 536

                                                                       
Query: 65  acacattgctatttattaccttgcattgactgaaaatcatctcttctgtcaaccccaggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 acacattgctatttattaccttgcattgactgaaaatcatctcttctgtcaaccccaggt 476

                                                                       
Query: 125 aaatcatgttacatgtttcataaaatatgagacctgggtcttttctgaagatgccactta 184
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 475 aaatcatgttacatgtttcataaaatatgagacctgtgtcttttctgaagatgccactta 416

                                                                       
Query: 185 gtgtgtgaacttgctgcctttggctgaatcctagttgctgcaaactccctcaagaccacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gtgtgtgaacttgctgcctttggctgaatcctagttgctgcaaactccctcaagaccacc 356

                                                                       
Query: 245 acttctagagtcctgtggcagctgaatgatagaagaaaaggtatgtatagaaaacagatg 304
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 355 acttctagagtcctgtggcagctgaatgagagaagaaaaggtatgtatagaaaacagatg 296

                                                                       
Query: 305 caaaaggttgagagctcgtccagcttttagtgctcagactgacagctaaatacaaattga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 caaaaggttgagagctcgtccagcttttagtgctcagactgacagctaaatacaaattga 236

                                                                       
Query: 365 gaaatgtaagtttcactttcagcaaattt-----------acctcatttttttcatttcg 413
           |||||||||||||||||||||||||||||           ||||||||||||||||||||
Sbjct: 235 gaaatgtaagtttcactttcagcaaatttactgggtgaaaacctcatttttttcatttcg 176

                                                                       
Query: 414 tttgaatacactcactgcttctcagagtatgcaactttacagtgagatattctttattct 473
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tttgaatacattcactgcttctcagagtatgcaactttacagtgagatattctttattct 116

                                                                       
Query: 474 tgaaggctcattattttccagtgaggttaccgaacctagactacgtagtacagattaccc 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 tgaaggctcattattttccagtgaggttaccgaacctagactacgtagtacagattaccc 56

                                                   
Query: 534 agcatggtatcaatcaaaaatatacgtggcaaatgggatt 573
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  agcatggtatcaatcaaaaatatacgtggcaaatgggatt 16


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)