BAC Information

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BAC

Clone NameMSMg01-403K19
Chromosome13 (Build37)
Map Location 67,544,193 - 67,592,320
singlet/doubletdoublet
Overlap geneC330011K17Rik, LOC666098, 9630025I21Rik, Zfp817
Upstream geneC330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459
Downstream geneZfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403K19.T7 (MSMg01no403_k19.b1)MSMg01-403K19.TJ (MSMg01no403_k19.g1)
ACCAG502530AG502531
length773761
length of high quality
(start - end)		611 (32 - 642)518 (69 - 586)
definitionCHROMAT_FILE: MSMg01no403_k19.b1 PHD_FILE: MSMg01no403_k19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:03 2005CHROMAT_FILE: MSMg01no403_k19.g1 PHD_FILE: MSMg01no403_k19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:03 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(67,544,193 - 67,544,796)(67,591,803 - 67,592,320)
sequence
GGGCCGCTATACGACTCACTATTTTCAGAGGATCCGCGGAATTCTCTGGC
ATTGCCTACTTAGAGAGCTGTGATCAATGGCCTCATTGTGATTGTTAAAT
TCATTGCCTGTTGTTCCTGTTGAGCAAGAGTTCATATATGAACAAAATAT
GAGAAGTATTCATCATACTTAGAATGATTATCTTTAGAATAGTGATCCTC
ACTTATACATATTTAACCATAACTGAAAATCTAGAGTATATTTCAATAGT
TGTAGGCACTGAACATAAGTCAAAAAATGTAGTAGGTGAACTAATCTATT
CTTCTACTGGAATAACTGCAGAAGTAAATAGAACATAGACATAATGTCAT
ATTTTTTAAAGTTAAATAGCTAAGTAAGTTGTCAGATCATTTTAGTAACA
GCAATAAGCCAGAAGATGTCACCTCAATGCTGCTGGTCTCTTCTTAATCA
CCGATAATTTCTTATCTCCAGCTAACCAGCATCAATAGTCCCAGTAATGC
AAAGGTTACTTTAAAAAGGTTATTTAAACAATTCACATACGATACAGCTG
GAAATCATGAAGGTATAAAGTAGTGTAGCATGGAAAGAGAAAGCCAATTG
TGATTGTGTGTGATTGGACTGTGATAGCTTGTATATTCTTAGACCAGGGA
GTGGCACCATTTGGAGGTGTGGCCTTGTTGGAGTAGGTGTGCCACTGGGA
GTGTGGGCATAATATCCTCACCCTATTTGCCTGGAATTCTACCTTACACT
TGCAGCCTTTGGATGAAGAATAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTACAAGTGTGGAGAATGTGGCAAAAGGTTTT
GTTCTTTTCCACACCTTCAATATCACCAAAGATTTCATTCTGGAGAGAAA
CCATACAAATGTGAACAATGTGGGAAAACATTTTCTACTCTCTCTTACCT
TCCTTGGCATAAATTGCGTCATTCTGGGGAGAAGTCATACAAATGTGAAA
AATGTGGGAAAATGTTTTACTCTACTTTGGACCTTAAAAAACACCAAAAA
ATTCATGAATATAAGTGTGGGGAATGTCACTATGGCTTTCCTAATTATGC
AGCCCTTACTGCACACCAGAGAGTTCATACTGGAGAGAAACCTCATGTAT
GCGAACAATGTGGGAAAGACTTTTCTAGGATCGATAGCCTCAATCAGCAT
CAGCTTGTTCATACTGGAGAGAAACCCTATAAATGTGAAAAATGTGGCAA
GTGCTTTTACCGATCTTCATCCCTTAAAAGACATCAAGGAATTCACTCTT
AATAGAAAATTTGACAAGTGATATGTGATAAAAAATCTTGCAAAATATTC
AGACCTTGCCCAAGACAAAGGAAATCATTGAGTAAAGAAGCCCTATGCCT
GTGAGGAATGCTGAGTGGTTAAAATGAAATCCACACTTTCTACCTCAATA
ACCGTCATTCTGGAAAGAACTTGTTAAACTGTGGACAAGTGCCCGGTTTT
TATGTTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_k19.b1 MSMg01no403_k19.b1 CHROMAT_FILE:
MSMg01no403_k19.b1 PHD_FILE: MSMg01no403_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:03 2005
         (611 letters)



>mm_chr13_67543986_67544996
          Length = 1011

 Score = 1152 bits (596), Expect = 0.0
 Identities = 602/604 (99%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattctctggcattgcctacttagagagctgtgatcaatggcctcattgtgattgttaa 67
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctctggcattgcatacttagagagctgtgatcaatggcctcattgtgattgttaa 267

                                                                       
Query: 68  attcattgcctgttgttcctgttgagcaagagttcatatatgaacaaaatatgagaagta 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 attcattgcctgttgttcctgttgagcaagagttcatatatgaacaaaatatgagaagta 327

                                                                       
Query: 128 ttcatcatacttagaatgattatctttagaatagtgatcctcacttatacatatttaacc 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttcatcatacttagaatgattatctttagaatagtgatcctcacttatacatatttaacc 387

                                                                       
Query: 188 ataactgaaaatctagagtatatttcaatagttgtaggcactgaacataagtcaaaaaat 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ataactgaaaatctagagtatatttcaatagttgtaggcactgaacataagtcaaaaaat 447

                                                                       
Query: 248 gtagtaggtgaactaatctattcttctactggaataactgcagaagtaaatagaacatag 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gtagtaggtgaactaatctattcttctactggaataactgcagaagtaaatagaacatag 507

                                                                       
Query: 308 acataatgtcatattttttaaagttaaatagctaagtaagttgtcagatcattttagtaa 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 acataatgtcatattttttaaagttaaatagctaagtaagttgtcagatcattttagtaa 567

                                                                       
Query: 368 cagcaataagccagaagatgtcacctcaatgctgctggtctcttcttaatcaccgataat 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cagcaataagccagaagatgtcacctcaatgctgctggtctcttcttaatcaccgataat 627

                                                                       
Query: 428 ttcttatctccagctaaccagcatcaatagtcccagtaatgcaaaggttactttaaaaag 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttcttatctccagctaaccagcatcaatagtcccagtaatgcaaaggttactttaaaaag 687

                                                                       
Query: 488 gttatttaaacaattcacatacgatacagctggaaatcatgaaggtataaagtagtgtag 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gttatttaaacaattcacatacgatacagctggaaatcatgaaggtataaagtagtgtag 747

                                                                       
Query: 548 catggaaagagaaagccaattgtgattgtgtgtgattggactgtgatagcttgtatattc 607
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 748 catggaaagagaaagccaattgtgattgtgtgtgattggactgtgatagtttgtatattc 807

               
Query: 608 ttag 611
           ||||
Sbjct: 808 ttag 811


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no403_k19.g1 MSMg01no403_k19.g1 CHROMAT_FILE:
MSMg01no403_k19.g1 PHD_FILE: MSMg01no403_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:03 2005
         (518 letters)



>mm_chr13_67591789_67592706
          Length = 918

 Score = 1002 bits (518), Expect = 0.0
 Identities = 518/518 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctacaagtgtggagaatgtggcaaaaggttttgttcttttccacaccttcaatatcacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ctacaagtgtggagaatgtggcaaaaggttttgttcttttccacaccttcaatatcacca 473

                                                                       
Query: 61  aagatttcattctggagagaaaccatacaaatgtgaacaatgtgggaaaacattttctac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aagatttcattctggagagaaaccatacaaatgtgaacaatgtgggaaaacattttctac 413

                                                                       
Query: 121 tctctcttaccttccttggcataaattgcgtcattctggggagaagtcatacaaatgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tctctcttaccttccttggcataaattgcgtcattctggggagaagtcatacaaatgtga 353

                                                                       
Query: 181 aaaatgtgggaaaatgttttactctactttggaccttaaaaaacaccaaaaaattcatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aaaatgtgggaaaatgttttactctactttggaccttaaaaaacaccaaaaaattcatga 293

                                                                       
Query: 241 atataagtgtggggaatgtcactatggctttcctaattatgcagcccttactgcacacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 atataagtgtggggaatgtcactatggctttcctaattatgcagcccttactgcacacca 233

                                                                       
Query: 301 gagagttcatactggagagaaacctcatgtatgcgaacaatgtgggaaagacttttctag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 gagagttcatactggagagaaacctcatgtatgcgaacaatgtgggaaagacttttctag 173

                                                                       
Query: 361 gatcgatagcctcaatcagcatcagcttgttcatactggagagaaaccctataaatgtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 gatcgatagcctcaatcagcatcagcttgttcatactggagagaaaccctataaatgtga 113

                                                                       
Query: 421 aaaatgtggcaagtgcttttaccgatcttcatcccttaaaagacatcaaggaattcactc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 aaaatgtggcaagtgcttttaccgatcttcatcccttaaaagacatcaaggaattcactc 53

                                                 
Query: 481 ttaatagaaaatttgacaagtgatatgtgataaaaaat 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 52  ttaatagaaaatttgacaagtgatatgtgataaaaaat 15


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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