Query= MSMg01no404_a15.b1 MSMg01no404_a15.b1 CHROMAT_FILE:
MSMg01no404_a15.b1 PHD_FILE: MSMg01no404_a15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:33 2005
(440 letters)
>mm_chr13_9141263_9142102
Length = 840
Score = 833 bits (431), Expect = 0.0
Identities = 437/439 (99%)
Strand = Plus / Minus
Query: 2 cccagctctccccaggccagcattccactgagagagacagacaaaggactgctaaagaag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 cccagctctccccaggccagcattccactgagagagacagacaaaggactgctaaagaag 581
Query: 62 ccattgtcagcataatgagactcaagtgactcagaagaaacagtctgggcacaggccaga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ccattgtcagcataatgagactcaagtgactcagaagaaacagtctgggcacaggccaga 521
Query: 122 gtagcatggtgctaccccacgtggaggtgccatttgctaatgggggaaaagagtgcagtg 181
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gtagcatggtgctaccctacgtggaggtgccatttgctaatgggggaaaagagtgcagtg 461
Query: 182 aagttcagacagaggcccgagaggcagggtcaacagacagtaaggaggctgtacaacagt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aagttcagacagaggcccgagaggcagggtcaacagacagtaaggaggctgtacaacagt 401
Query: 242 ggagtgaaaaggaagtcacagagtgaagcatgtatgatattcaggtcaaggagattgttc 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ggagtgaaaaggaagtcacagagtgaagcatgtatgatattcaggtcaaggagattgttg 341
Query: 302 aaatttttatttgaatgtgactggaaccaatttgggggggtgatattttggaaagaccac 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aaatttttatttgaatgtgactggaaccaatttgggggggtgatattttggaaagaccac 281
Query: 362 catggttacatggtacagacagaaagagaagctgcagcagtatgatcaagatgctagcac 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 catggttacatggtacagacagaaagagaagctgcagcagtatgatcaagatgctagcac 221
Query: 422 agtcactgacggaagactg 440
|||||||||||||||||||
Sbjct: 220 agtcactgacggaagactg 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_a15.g1 MSMg01no404_a15.g1 CHROMAT_FILE:
MSMg01no404_a15.g1 PHD_FILE: MSMg01no404_a15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:33 2005
(426 letters)
>mm_chr13_9004435_9005259
Length = 825
Score = 793 bits (410), Expect = 0.0
Identities = 422/426 (99%), Gaps = 1/426 (0%)
Strand = Plus / Plus
Query: 1 acaaccatcagactgcaaagccacattttccattattctgcctcccaggagtgactttgt 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaaccatcggactgcaaagccacattttccattattctgcctcccaggagtgactttgt 260
Query: 61 tcttgacctctttcaggttcttacctttttgagtgtgactgccagtgcatgacaagttac 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tcttgacctctttcaggttcttacctttttgagtgtgactgccagtgcatgacaagttgc 320
Query: 121 acatggggttgtgtgtgtaagccatccacttcccaagtgtttgactaaagcactgtgtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatggggttgtgtgtgtaagccatccacttcccaagtgtttgactaaagcactgtgtgt 380
Query: 181 acatgtagtgtttcttctgtgagcacactgtttctgtccttcatgtatggcccgggtgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatgtagtgtttcttctgtgagcacactgtttctgtccttcatgtatggcccgggtgag 440
Query: 241 atggttgccaccatgagcttatgcccttgttgacatcagcagctgtcaatgagggatgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggttgccaccatgagcttatgcccttgttgacatcagcagctgtcaatgagggatgtt 500
Query: 301 tccacgtgttagttatagcaccaatatatgattattcattccatgttaacacagtgttaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccacgtgttagttatagcaccaatatatgattattcattccatgttaacacagtgttaa 560
Query: 361 aaacattgttaaaaaacactttgcaattcccaaaaggatattttaggtttaataaaaatc 420
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 aaacattgttaaaaa-cactttgcaattcccaaaaggatgttttaggtttaataaaaatc 619
Query: 421 ttttaa 426
||||||
Sbjct: 620 ttttaa 625
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 825
Length adjustment: 9
Effective length of query: 417
Effective length of database: 816
Effective search space: 340272
Effective search space used: 340272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
