Query= MSMg01no404_b04.b1 MSMg01no404_b04.b1 CHROMAT_FILE:
MSMg01no404_b04.b1 PHD_FILE: MSMg01no404_b04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:36 2005
(482 letters)
>mm_chr13_118158339_118159216
Length = 878
Score = 580 bits (300), Expect = e-170
Identities = 312/318 (98%), Gaps = 4/318 (1%)
Strand = Plus / Minus
Query: 1 ttatacagagaaaccctgtctcaaacaaacaaacaagaagtgcccaaagtaaaatgaaga 60
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 314 ttatacagagaaaccctgtct----caaacaaacaagaagtgcccaaagtaaaacgaaga 259
Query: 61 gtcatatagccattattgtattttaaaatggtataaaatgtttacattaagactatatca 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gtcgtatagccattattgtattttaaaatggtataaaatgtttacattaagactatatca 199
Query: 121 aagtgtggagcagatactgaaggaaaacccatccagagactgccccatctgggaattcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 aagtgtggagcagatactgaaggaaaacccatccagagactgccccatctgggaattcat 139
Query: 181 cccatatacagacaccaaatccagacactattgtggatgccaagatgtgtttgctgacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 cccatatacagacaccaaatccagacactattgtggatgccaagatgtgtttgctgacag 79
Query: 241 gagcctggtatagatcctgagaggctgacaaatacagctgcagattatcacagccatcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 gagcctggtatagatcctgagaggctgacaaatacagctgcagattatcacagccatcca 19
Query: 301 ttggactgagtacaggga 318
||||||||||||||||||
Sbjct: 18 ttggactgagtacaggga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 878
Length adjustment: 10
Effective length of query: 472
Effective length of database: 868
Effective search space: 409696
Effective search space used: 409696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_b04.g1 MSMg01no404_b04.g1 CHROMAT_FILE:
MSMg01no404_b04.g1 PHD_FILE: MSMg01no404_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:36 2005
(383 letters)
>mm_chr13_117986297_117987079
Length = 783
Score = 658 bits (340), Expect = 0.0
Identities = 376/398 (94%), Gaps = 16/398 (4%)
Strand = Plus / Plus
Query: 1 catacagctacaaaatatttcctccaactgatctaaataatcagattggttaatagtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 catacagctacaaaatatttcctccaactgatctaaataatcagattggttaatagtgtt 244
Query: 61 gcttatgtgtgtgttaggctgctacacccccctcctagttctaatttgagctagg----- 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gcttatgtgtgtgttaggctgctacacccccctcctagttctaatttgagctaggaaatg 304
Query: 116 -----------aaatgagagagtggtggtatagctcagtggtagggtgctcactggttgc 164
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gaactattagtaaatgagagagtggtggtatagctcagtggtagggtgctcactggttgc 364
Query: 165 atctgtgaccccagtctcatgaagagcaccacaaaagtctaggtagggtcaatgcaaaat 224
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 365 atctgtgaccccagtctcatgcagagcaccacaaaagtctagatagggtcaatgcaaaat 424
Query: 225 tcttaagtaaaaggtacttgtgtttgatagatatgagtcaagaggatttgaggtaaattg 284
||||||||||||||||||||||||||| ||| || |||||||||||||||||||||| ||
Sbjct: 425 tcttaagtaaaaggtacttgtgtttgaaagagataagtcaagaggatttgaggtaaactg 484
Query: 285 tcaaattcaccacaaattcaaccatagaacggggcagaagaaagatgcagaggaggacag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tcaaattcaccacaaattcaaccatagaacggggcagaagaaagatgcagaggaggacag 544
Query: 345 aaggtacctttacgtctggttcacttgtcttatttttg 382
||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aaggtacctttacgtctggttcacttgtcttatttttg 582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space: 289476
Effective search space used: 289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
