BAC Information

Click to search

BAC

Clone NameMSMg01-405D06
Chromosome13 (Build37)
Map Location 67,491,677 - 67,575,395
singlet/doubletdoublet
Overlap gene2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik
Upstream gene2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456
Downstream geneZfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405D06.T7 (MSMg01no405_d06.b1)MSMg01-405D06.TJ (MSMg01no405_d06.g1)
ACCAG503690AG503691
length754747
length of high quality
(start - end)		537 (52 - 588)535 (82 - 616)
definitionCHROMAT_FILE: MSMg01no405_d06.b1 PHD_FILE: MSMg01no405_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:07 2005CHROMAT_FILE: MSMg01no405_d06.g1 PHD_FILE: MSMg01no405_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:07 2005
singlet/doubletdoubletdoublet
BLAST hitpluralplural
Map location.(67,575,031 - 67,575,395)(67,491,677 - 67,492,209)
sequence
NTTTTTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATTCTGTACAGAAACTTGACAAGTGTGAAGAATGTGGGA
AAGTATTTTCCTCTGCTTTCTTTCTTAACCAGCATAAAGGAATTGATTCC
GGAGAGAAAAGGTACAAGTGTCAAGAATGTGGCAAATCCTTTTGCTATCG
TTCATATCTTAGGGAACATTATAGAATGCATTCTGGAGAGTATCCCTACA
AGTGTGAAGAATGTGGCAAAGGGTTTTCCCGTTCCTCAAAGCTTCAGGAA
CATCAAACAATTCATACTGGAGTTAAACCTTACAAGTGTGAAGAGTGTGG
GAAATGTTTTTCCTCTTTTACGTCCCTTAAAAGACATCAAATCATCCATT
CTGAAGATACTCCCCATGAGTGTGTAGAATGCGGCAAAAGGTTTTCTAGT
TCTTCCCGCCTTCAGGAACATCAGAAAATTCACATTGAAGAGAAACCCTA
CAAATGTGAAGAATGTGACAAAGCCTTTCTTTATCACTCGTTTCTTAGGA
GACACAGAGCAGTTCATACTAGAGAGAAACCCTACACGTGTGAAAAGTGT
GGGAAATGTTTTTCTTCCTTTACATCCCTGAAAAGACATCAAAATCATTC
CATAGACATTTTCCATGAGTGTGGATAATGGGGCAAAAGATTTTTAAGTT
CTTTCCCCCTACCGGAAAATCTAAAAATTCTACTGGGGAAATCCTTCCAA
ATTG

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGATGTTGCTTCAGCAT
TGAAAGATAGTAAAATGTTCTGCCACAGTCTTCACACTTGTAGATTTTTT
CATCAGTATGATTTTTCATGTGTATAAAAAGTGATGAGCGAGTACTGAAG
GCCTTATGACACTCTTTACACTTGTAAGGTTTGTCTCCAGTGTGAAGTCT
CTGATGTATAGAAAGTGTTTTATGAGAACTAAGGGCCTTACCAAATTCTC
CACACTTGTAGGGTTTCTCCCCTATATGATTTCTTCTTTGTGTAATAAGG
AGCGATTTACAATTAGTCAGTTTGCTGTAATTGTTAGGATCATTGGGTGT
TATTCCTGTGGAGCCAAAGATGAGATATGAACAAAAGTTAAGCAATATTC
TTTTTTATTAGAAGGCCTATTTTTTAAGAATGAAGACATTAACTCATATA
TATTAAAGCATAAATAAAAATCCACAGTATATTTCAATGCGTGTGGCACT
GAGGAAAATTCACAAATATAGTAGGTTGAAACAATGTGTATTTTGACTGG
AGCAAGAGTATAATTCCAGAGAACATAGAAATAATGGCCTATTATTCTAA
GGTACATGCCCTAATAAGTTGTAAGGGCATTTTACTACCACAAGAAGCCT
TTCCAGCAAAATAGATATTATGAAGCCCCCCCTCCCTGAAATTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_d06.b1 MSMg01no405_d06.b1 CHROMAT_FILE:
MSMg01no405_d06.b1 PHD_FILE: MSMg01no405_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:07 2005
         (537 letters)



>mm_chr13_67575031_67575967
          Length = 937

 Score =  636 bits (329), Expect = 0.0
 Identities = 356/365 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattctgtacagaaacttgacaagtgtgaagaatgtgggaaagtattttcctctg 64
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gaattcattctggagagaaacttgacaagtgtgaagaatgtgggaaagtattttcctctg 306

                                                                       
Query: 65  ctttctttcttaaccagcataaaggaattgattccggagagaaaaggtacaagtgtcaag 124
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 305 ctttctttcttaaccagcataaaggaattgattccatagagaaaaggtacaagtgtcaag 246

                                                                       
Query: 125 aatgtggcaaatccttttgctatcgttcatatcttagggaacattatagaatgcattctg 184
           ||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 245 aatgtggcaaatctttttgctatcgttcatatcttagggaacattacagaaggcattctg 186

                                                                       
Query: 185 gagagtatccctacaagtgtgaagaatgtggcaaagggttttcccgttcctcaaagcttc 244
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gagagtatccctacaagtgcgaagaatgtggcaaagggttttcccgttcctcaaagcttc 126

                                                                       
Query: 245 aggaacatcaaacaattcatactggagttaaaccttacaagtgtgaagagtgtgggaaat 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 125 aggaacatcaaacaattcatactggagttaaaccttacaagtgtgaagagtgtgagaaat 66

                                                                       
Query: 305 gtttttcctcttttacgtcccttaaaagacatcaaatcatccattctgaagatactcccc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  gtttttcctcttttacgtcccttaaaagacatcaaatcatccattctgaagatactcccc 6

                
Query: 365 atgag 369
           |||||
Sbjct: 5   atgag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no405_d06.g1 MSMg01no405_d06.g1 CHROMAT_FILE:
MSMg01no405_d06.g1 PHD_FILE: MSMg01no405_d06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:07 2005
         (535 letters)



>mm_chr13_67491477_67492411
          Length = 935

 Score = 1023 bits (529), Expect = 0.0
 Identities = 532/533 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgatgttgcttcagcattgaaagatagtaaaatgttctgccacagtcttcacacttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgatgttgcttcagcattgaaagatagtaaaatgttctgccacagtcttcacacttgt 260

                                                                       
Query: 61  agattttttcatcagtatgatttttcatgtgtataaaaagtgatgagcgagtactgaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agattttttcatcagtatgatttttcatgtgtataaaaagtgatgagcgagtactgaagg 320

                                                                       
Query: 121 ccttatgacactctttacacttgtaaggtttgtctccagtgtgaagtctctgatgtatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttatgacactctttacacttgtaaggtttgtctccagtgtgaagtctctgatgtatag 380

                                                                       
Query: 181 aaagtgttttatgagaactaagggccttaccaaattctccacacttgtagggtttctccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagtgttttatgagaactaagggccttaccaaattctccacacttgtagggtttctccc 440

                                                                       
Query: 241 ctatatgatttcttctttgtgtaataaggagcgatttacaattagtcagtttgctgtaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctatatgatttcttctttgtgtaataaggagcgatttacaattagtcagtttgctgtaat 500

                                                                       
Query: 301 tgttaggatcattgggtgttattcctgtggagccaaagatgagatatgaacaaaagttaa 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 tgttaggatcattgggtgttattcctgttgagccaaagatgagatatgaacaaaagttaa 560

                                                                       
Query: 361 gcaatattcttttttattagaaggcctattttttaagaatgaagacattaactcatatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaatattcttttttattagaaggcctattttttaagaatgaagacattaactcatatat 620

                                                                       
Query: 421 attaaagcataaataaaaatccacagtatatttcaatgcgtgtggcactgaggaaaattc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attaaagcataaataaaaatccacagtatatttcaatgcgtgtggcactgaggaaaattc 680

                                                                
Query: 481 acaaatatagtaggttgaaacaatgtgtattttgactggagcaagagtataat 533
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaaatatagtaggttgaaacaatgtgtattttgactggagcaagagtataat 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |