BAC Information

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BAC

Clone NameMSMg01-405E23
Chromosome13 (Build37)
Map Location 86,138,075 - 86,138,381
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1, LOC435373, LOC675662
Downstream geneCox7c, LOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405E23.T7 (MSMg01no405_e23.b1)MSMg01-405E23.TJ (MSMg01no405_e23.g1)
ACCAG503771AG503772
length767753
length of high quality
(start - end)		471 (51 - 521)512 (83 - 594)
definitionCHROMAT_FILE: MSMg01no405_e23.b1 PHD_FILE: MSMg01no405_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:15 2005CHROMAT_FILE: MSMg01no405_e23.g1 PHD_FILE: MSMg01no405_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTCATTCTCATCTACATCTCTCTCACCCAGTTTCCTTGTT
TTATCTGTCTCTTATCCTTGCTAGTGCCTTACTTCTTGTCTAGTTTCTAT
GTGTCTGTGGAATATAGAATGGTTATCATGTATTTTATGGCTAAAACCCA
CTTAAACGTACATACCATGAATGTCATTTGGGGACTGGGTTAATTCAATA
TTCTCAAGTTCCATCCATTTGCCTGAAAAAAAAAATCATGATGTGTTTGT
TTCTCTGTAGTGAAATAATATTCTATTGTGTAAAATTTCCTTATCCATTG
TTTAGTTGAGGGACATCTAGGTTGTTTCCAGTTTCTGGCTATTCTGGCTA
AAACTGTTACAAACATAATTAAGCCAATATCTTTGTGGGATGTTGGAGTA
TATTTTTGGTATATGCTCTAGTCAAGCTAGGACTTGAGATAGAGCTATTC
ATAATTTTCTGAGAACCCATCAAACTCATTAGAAGCAGCACTCTTATGGA
GNTAGAACATGCCTATATTTGGNGAGCAATACATTTGGTATAAATGAATT
TCTTCAAAAAAACTTTGAGCATTTATAAAAGGGTTCCATAAAAGGTCCAG
GTCCCCTTTATGTATATACCCTGAAAATTGGAAACCCCCCAAAAATATCT
TGCGGATTCTTCCAAAATGGCCCCTTTTTAAAAAACCATTTAAGCCCCCT
AACGTTTTATTGAAAAA

NTCTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCCCTGAGCC
CCATTTTTAATGGGGTTATTTGACTTTCCAGAACATGAATTGGTCCATTC
CTATCTCCTTGTGCTAAGGTTAAATCTAAGTGGATGAAGGAACTCCACAT
AAAACCAGACAATGAAACTTATAGAGGAGAAAGTGGGGGGAAAGCCTTGA
AGGTATGGCCACAGGGCAAAAATTCCTGAATAGAACAGCAATGGCTTCAG
TTGTAAGATCGAGAATCGACAAATGGGACCTCATAAAATTGCAAAGCTTC
TGTAAGGCAAAAGACACTGTCAATAAGACAAAAAGGCCACCAACAGATTG
GGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAATA
TATATAAAAAACTCAAGAAGGTGGACTCCAGAATTGCATTTTAATTTCTC
ATCAACTGAGAACTGAAGCCCAGGATCACATTTAACATGATCTATAAAAA
CAAAGTGGTATGGCATTTCACACTTTTACAAACTATGCTAGAAGAAACTT
TGTATCTCTACAGATGTCTACTATAGCTTCCATTTTACTAACAGCATATT
TATGAATATCACTGGGACCTCACATCACATTATTCCAGTTGTCTGGGGCA
CTTCCTTTTCTTTGAGAGAAGACCTTAAAGAAATCCCCTGGGGGCAATTG
TAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_e23.g1 MSMg01no405_e23.g1 CHROMAT_FILE:
MSMg01no405_e23.g1 PHD_FILE: MSMg01no405_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:15 2005
         (512 letters)



>mm_chr13_86137474_86138385
          Length = 912

 Score =  547 bits (283), Expect = e-160
 Identities = 301/307 (98%)
 Strand = Plus / Minus

                                                                       
Query: 206 gcaatggcttcagttgtaagatcgagaatcgacaaatgggacctcataaaattgcaaagc 265
           ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 gcaatggtttgagttgtaagatcgagaatcgacaaatgggacctcataaaattgcaaagc 849

                                                                       
Query: 266 ttctgtaaggcaaaagacactgtcaataagacaaaaaggccaccaacagattgggaaagg 325
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 848 ttctgtaaggcaaaagacactgtaaataagacaaaaaggccaccaacagattgggaaagg 789

                                                                       
Query: 326 atctttacctatcctaaatcagataggggactaatatccaatatatataaaaaactcaag 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 788 atctttacctatcctaaatcagataggggactaatatccaatatatataaagaactcaag 729

                                                                       
Query: 386 aaggtggactccagaattgcattttaatttctcatcaactgagaactgaagcccaggatc 445
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 aaggtagactccagaattgcattttaatttctcatcaactgagaactgaagcccaggatc 669

                                                                       
Query: 446 acatttaacatgatctataaaaacaaagtggtatggcatttcacacttttacaaactatg 505
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 acatctaacatgatctataaaaacaaagtggtatggcatttcacacttttacaaactatg 609

                  
Query: 506 ctagaag 512
           |||||||
Sbjct: 608 ctagaag 602


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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