BAC Information

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BAC

Clone NameMSMg01-405I03
Chromosome13 (Build37)
Map Location 29,840,880 - 30,040,289
singlet/doubletdoublet
Overlap geneCdkal1, E2f3
Upstream geneLOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneMboat1, Agtr1a, Uqcrfs1, Dusp22, LOC666443, Irf4, Exoc2, Hus1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405I03.T7 (MSMg01no405_i03.b1)MSMg01-405I03.TJ (MSMg01no405_i03.g1)
ACCAG503922AG503923
length796782
length of high quality
(start - end)
238 (78 - 315)245 (75 - 319)
definitionCHROMAT_FILE: MSMg01no405_i03.b1 PHD_FILE: MSMg01no405_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:31 2005CHROMAT_FILE: MSMg01no405_i03.g1 PHD_FILE: MSMg01no405_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,040,052 - 30,040,289)(29,840,880 - 29,841,124)
sequence
NTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXAAATGCATGACGAGGGCG
CGGAATCCTTCCAATACAAACACAGCGTTTGCTGATAAAACATGGTACAT
CTTGTAATCCTGGCTGCATGTAACCAGGAAGTTTGTCTTCACTCTTGGAG
GCAGCACAGTATGATCACTACTAATAGTGATTTAAAAGGCTTGGGTATAA
TGATCATGACAGATCCAATATTCTGGGGTTCATGTCTCCAGCCTGCATAT
TTTATCGTCCAGAGTCGTCCTCACTGTGACACCACGGAAGTACCCTATCT
TGCAGTTTCCTGAATAGCTTATTTTTTTTGCCGAGNTACCTCCTCCTTGG
CAGCGAGGAGGATGTAACTGCCCCTCCTTAGCAATCTGGCTTAAAGCAGG
AGGCTCTTATGTATCATCCATGCTTATTTTCGTGGAGCTATTTCAACGAA
TGCTTTTGCATGGATTTACCCTTGTAACCATTGATATATGTATTTGATAT
GCATGCTTGTTTCGTGATTCTCTACTCATGACGTTCTTGGTTTGTACTTT
TCGTTGATAATGATGCTCGCATACCTGTTTGTGATATACCAACTTACTCT
GTTTTTTGTTATCTATTCCTTATAGTATACCCGGTTTTTGTATCTACATC
AGCTACCACCTTTATATCTTTATTTTTTTTCCTTCTTATTTTTTTTTTTT
TCTTTTTTTCCTCTTTTCGTCATTTTCTATCTGTTTTCTTTTTTTTTCCT
CTCTCCTACTTTACTCATTTACGTGCGTATTTAACTACCTCCCCTC
TCCGATGCTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTATGATTTTCTACCTTGCTCACAG
ACATCCAAGAAGGAATGTCTACCTTGAAGGACACCACTAGAAAAAGAATG
GCAAACTAACTGATGATTGAAGCCTTAGGTTCAAGAAATGTGGCTTTTAC
AAATAGTTTAAACATATGAGAGGATGTATTTATGAGGAACCTGGAACAGG
CTTATTGAGAGAAAGGAAAAGCAGACAGGGGTTTATAAGGGACTAGGGAA
GAGAGGAGTAAGGATTGCTATTATTGTTTCAGGTGTAATAACGAAAGCAG
CTTCTGATATATGTTCTTACCAGTTCTTACCTGCATACTCTACAGAATTC
CTTATGCTCTCTGATCCATCATATGATTACTAACCAACACCTCATCTCCC
TGTCATCTATAACACATTTAATTTATTCAGGCTATGTTTTGTCCTATTAT
TCCATAATTTTTTCCCTTTTTTCCATTTTCTTCTTTTTTTTTCTTTTCCC
TTTACCTCTTTCTCCTCTTTTTCTCCTCCTCCTTTTCTCCTCCTTTCCTC
CTTTTTCCCTCTTTCTTCACCCCTTTTCTCTTTCTCTTTTCCCCCCTTCT
TCTTTTTTTTCTTTTTCCCTTTTTTATTCCCTCTCTTCCCTTTCCTTTTT
TTCCCCCTTCCCTTCTCTCCTTTTTTATTTACCTCCCTCCTCTTCTCCTC
TTCTCTTTTATTCCCCCCCCCTCTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_i03.b1 MSMg01no405_i03.b1 CHROMAT_FILE:
MSMg01no405_i03.b1 PHD_FILE: MSMg01no405_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:31 2005
         (238 letters)



>mm_chr13_30039852_30040489
          Length = 638

 Score =  422 bits (218), Expect = e-122
 Identities = 233/238 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgctgataaaacatggtacatcttgtaatcctggctgcatgtaaccaggaagtttgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tttgctgataaaacatggtacatcttgtaatcctggctgcatgtaaccaggaagtttgtc 379

                                                                       
Query: 61  ttcactcttggaggcagcacagtatgatcactactaatagtgatttaaaaggcttgggta 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 378 ttcactcttggaggcagcacagtatgatcactactaatagtgattaaaaaggcttgggta 319

                                                                       
Query: 121 taatgatcatgacagatccaatattctggggttcatgtctccagcctgcatattttatcg 180
           ||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 318 taatgatcacgacagagccaatattctggggttcatgtctccagcctgcatcttttatcg 259

                                                                     
Query: 181 tccagagtcgtcctcactgtgacaccacggaagtaccctatcttgcagtttcctgaat 238
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 258 tccagagtcgtcctcactgtgacaccacggaagtaccctatcttgaagtttcctgaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no405_i03.g1 MSMg01no405_i03.g1 CHROMAT_FILE:
MSMg01no405_i03.g1 PHD_FILE: MSMg01no405_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:31 2005
         (245 letters)



>mm_chr13_29840680_29841324
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatgattttctaccttgctcacagacatccaagaaggaatgtctaccttgaaggacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctatgattttctaccttgctcacagacatccaagaaggaatgtctaccttgaaggacac 260

                                                                       
Query: 61  cactagaaaaagaatggcaaactaactgatgattgaagccttaggttcaagaaatgtggc 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 cactagaaaaagaatggcaaactaactgatgattgaagccctaggttcaagaaatgtggc 320

                                                                       
Query: 121 ttttacaaatagtttaaacatatgagaggatgtatttatgaggaacctggaacaggctta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 321 ttttacaaatagtttaaacatatgagaggatgtatttatgaggaacctggaacaggcaaa 380

                                                                       
Query: 181 ttgagagaaaggaaaagcagacaggggtttataagggactagggaagagaggagtaagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgagagaaaggaaaagcagacaggggtttataagggactagggaagagaggagtaagga 440

                
Query: 241 ttgct 245
           |||||
Sbjct: 441 ttgct 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)