BAC Information

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BAC

Clone NameMSMg01-405L15
Chromosome13 (Build37)
Map Location 72,280,653 - 72,281,092
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627230, LOC100042360, Irx1
Downstream geneLOC100042828, LOC100042832, LOC100042836, Irx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405L15.T7 (MSMg01no405_l15.b1)MSMg01-405L15.TJ (MSMg01no405_l15.g1)
ACCAG504089AG504090
length770759
length of high quality
(start - end)
440 (74 - 513)415 (77 - 491)
definitionCHROMAT_FILE: MSMg01no405_l15.b1 PHD_FILE: MSMg01no405_l15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:47 2005CHROMAT_FILE: MSMg01no405_l15.g1 PHD_FILE: MSMg01no405_l15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGC
GGAATTCATTCTATTTCGAGAGTTTGCTGTTACTTCAATTCTTGACTTAC
TGTAGAGGTATAAATAATTTAGTTTACTTGTGCAGTAACATCCTGTGCCC
ACCCAGTCTACCTGAGCTCCCAATCTCCTTCTCTCTTTATGCCCATCTAG
TTTCTACAGAACCTCCCACATGGGCTCACCATTTACAGAATGGTGGCTGC
ACCAGTGACTGACAGGCCAGATAGTACACATGTCCACCAAAGTGCAGCTA
ACCAGAGGTTATTCAGCAGTATTTTTCAAAGGGAAGCTTGAACCCTACAG
TCGAGGAATGGCATACACTGCTGTTACTTCCAGTTCAGCTGGAGTTTTAC
TTACTGTTTTACTTACAGTGATCAGTGCCTATATTTAAGCCCTATTGTGG
TGGCTGAATGTCTGCCCACTTCCATAAAGACTGCTGACATTTCCCATGAG
TTTAGATTCTGATAGGCAGATGTTCGTTCACTGGGTCCTCCAAGTCCCTC
AGCCATCCATGCAGTGTTTGCTTGGAAAATGTGGTCTACGTGCGCCTGTG
GTCTTCCCTCCGCGGGATAATACATCCCTCCTTCTTGCTGGGAAAAACCA
CCACTTAATTTTCCCTATCTCATCCTTTCTGAGGAGGGGATGTTCTCCTG
GTCCTAAAAAGTTGAAGCGCGCAAATACGTTTTGGGCTTCATTTCCTCGA
AAAATGTTTGTGGGGCCCGC
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGACAGGAACTCANACAAGGGTAG
GAACCCTGAGGCAAGAGCTGATGCAGAGGCCATGGAGAGATGCTGCTTAC
TGGTTTACTCCTAGCTTGCTCAGCCCACTTTCTTATAGAACCCAGGGCAC
CAGCCCAAAGGTGGTACCACCCACAATGGTCTACATCTTTCCACATCAAT
CACTGTATAGGAAAATGCTCTATGGGCTTAACTACAGCCCAAATCTATGG
AGGGAATGTCTTAATTAAGGTTCCCTCCTCTTAGATAATGTAGGTGTGTG
TCAAGTGGACACAAACTAGCCAGCAGAGTAACCAACACTAAAGCTTTTGA
GAACGTTGTGTGAACTTACTACTGTAGAAATTTCTTAAATAAGCATGCGT
TCTTGTATATTTTTTATAATTTTGTTATAATATTTTGCTCTTTGAGAGTC
TTCCAATATATTCATAGGGATATAATCACATCCACCCTCATTTCTTTCCA
ACTTCCTTTTAACTTCTCCCAACATATCTACCTCCAAAATTATGGCTTTT
GGCGGCTGTGAGTATCCCCCAACCCCATTAGCAGGGTCCTTATAGGCTTG
TACGGGCTCCCCCTCCTTGATAGTCCGCGCTATGGCTTCTTTCCCCTTTT
GCTTCCCACACCCATTATTACCCCCCCCTTTTATTTCTATTCTCCTTCTT
CCCCCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_l15.b1 MSMg01no405_l15.b1 CHROMAT_FILE:
MSMg01no405_l15.b1 PHD_FILE: MSMg01no405_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:47 2005
         (440 letters)



>mm_chr13_72280453_72281292
          Length = 840

 Score =  760 bits (393), Expect = 0.0
 Identities = 428/445 (96%), Gaps = 10/445 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgctgttacttcaattcttgacttactgtagaggtataaataatttagtttacttgtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgctgttacttcaattcttgacttactgtagaggtataaataatttagtttacttgtgc 260

                                                                       
Query: 61  agtaacatcctgtgcccacccagtctacctgagctcccaatctccttctctctttatgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtaacatcctgtgcccacccagtctacctgagctcccaatctccttctctctttatgcc 320

                                                                       
Query: 121 catctagtttctacagaacctcccacatgggctcaccatttacagaatggtggctgcacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catctagtttctacagaacctcccacatgggctcaccatttacagaatggtggctgcacc 380

                                                                       
Query: 181 agtgactgacaggccagatagtacacatgtccaccaaagtgcagctaaccagaggttatt 240
           |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 agtgaccgacaggccagatagtacacatttccaccaaagtgcagctaaccagaggttatt 440

                                                                       
Query: 241 cagcagtattttt-----caaagggaagcttgaaccctacagtcgaggaatggcatacac 295
           |||||| |          |||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 441 cagcagca-----ggaaccaaagggaagcttgaaccctgcagtcaaggaatggcatacac 495

                                                                       
Query: 296 tgctgttacttccagttcagctggagttttacttactgttttacttacagtgatcagtgc 355
           || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 496 tggtgttacttccagttcagctggagttttacttactgttttacttacagtgatcggtgc 555

                                                                       
Query: 356 ctatatttaagccctattgtggtggctgaatgtctgcccacttccataaagactgctgac 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctatatttaagccctattgtggtggctgaatgtctgcccacttccataaagactgctgac 615

                                    
Query: 416 atttcccatgagtttagattctgat 440
           |||||||||||||||||||||||||
Sbjct: 616 atttcccatgagtttagattctgat 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)