Query= MSMg01no406_o15.b1 MSMg01no406_o15.b1 CHROMAT_FILE:
MSMg01no406_o15.b1 PHD_FILE: MSMg01no406_o15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:23 2005
(241 letters)
>mm_chr13_5410959_5411599
Length = 641
Score = 466 bits (241), Expect = e-136
Identities = 241/241 (100%)
Strand = Plus / Minus
Query: 1 aagaaaatgatttaaggacagctgtcatatcaggtaaaaagaaagtcttaaaagcattcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaaaatgatttaaggacagctgtcatatcaggtaaaaagaaagtcttaaaagcattcc 382
Query: 61 ccaaagtcatatatattttacatttttggtaaagatttgatgcaacaatggttttaaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaaagtcatatatattttacatttttggtaaagatttgatgcaacaatggttttaaaga 322
Query: 121 gccacagatgttcacagaatgcaactagtcagatgagttcatggtttctggggacagtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccacagatgttcacagaatgcaactagtcagatgagttcatggtttctggggacagtca 262
Query: 181 gaatttccgtggaatgagcctcaaagtctatccattaagcaatacaaacagaaatgaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatttccgtggaatgagcctcaaagtctatccattaagcaatacaaacagaaatgaaag 202
Query: 241 a 241
|
Sbjct: 201 a 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space: 146624
Effective search space used: 146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no406_o15.g1 MSMg01no406_o15.g1 CHROMAT_FILE:
MSMg01no406_o15.g1 PHD_FILE: MSMg01no406_o15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:24 2005
(436 letters)
>mm_chr13_5202425_5203260
Length = 836
Score = 804 bits (416), Expect = 0.0
Identities = 431/436 (98%)
Strand = Plus / Plus
Query: 1 agaagactagagagaaggaaataaactccactggccattctgtcaaataaagctaatggc 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 agaagactagagagaaggaaataaactccactggccattctgttaaataaagctaatggc 260
Query: 61 taagactgttttcattttagtttaaacatcatttacttttgtcaagtggggatagtgtaa 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 taagactgttttcattttagtttaaacatcatttacttttgtcatgtggggatagtgtaa 320
Query: 121 ctggattataactatttataagacagaagcttacattttgatcgtacatttccaaacctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggattataactatttataagacagaagcttacattttgatcgtacatttccaaacctg 380
Query: 181 tgcagttcctgacctgacacatgacacaagacagtatcagtcatctttatactctctctt 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 tgcagttcctgacctgacacatgacacaagacagtatctgtcatctttatactctctctt 440
Query: 241 agtatagaaccccatctcagggtaatgggtgcttttgtgtctgactattttatcccatcc 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtagagaaccccatctcagggtaatgggtgcttttgtgtctgactattttatcccatcc 500
Query: 301 ttaggaaattgaggcttatttagttggaattaaaacgtgttctcccaaattgggttatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaggaaattgaggcttatttagttggaattaaaacgtgttctcccaaattgggttatgt 560
Query: 361 tccctgattcttatatataatagttcatatatgctttgtgtttacaatggaaacatattg 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccctgattcttatatataacagttcatatatgctttgtgtttacaatggaaacatattg 620
Query: 421 ttttgatactggaacc 436
||||||||||||||||
Sbjct: 621 ttttgatactggaacc 636
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space: 353129
Effective search space used: 353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
