Query= MSMg01no407_g09.b1 MSMg01no407_g09.b1 CHROMAT_FILE:
MSMg01no407_g09.b1 PHD_FILE: MSMg01no407_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:02 2005
(471 letters)
>mm_chr13_71598944_71599814
Length = 871
Score = 799 bits (413), Expect = 0.0
Identities = 452/465 (97%), Gaps = 2/465 (0%)
Strand = Plus / Plus
Query: 8 ttcctgtcttccgctccttcagcaagatctgtccagaactgggcatgtcaaaagtccatc 67
|||||||| || |||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 208 ttcctgtcctcagctccttcagcaagctctgtccagaactgggaatgtcaaaagtccatc 267
Query: 68 atagatgggggg-agatcaaaagacccagctctcctccctcggcagcttttaggaaggaa 126
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atagatgggggggagatcaaaagacccagctctcctccctcggcagcttttaggaaggaa 327
Query: 127 tggcttctgggagagggtgacttcatatttcttcagtgctatagtcactgccaagttctc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tggcttctgggagagggtgacttcatatttcttcagtgctatagtcactgccaagttctc 387
Query: 187 aagtgccaatgaatacacacccacacatccaagctggtacagaaaatcctcactatcctc 246
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aagtgccaataaatacacacccacacatccaagctggtacagaaaatcctcactatcctc 447
Query: 247 gggaagtcattacacaaagacactgagataggaggggtttgtttggaagaaagggttcag 306
|||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||
Sbjct: 448 gggaagtcattacacaaagacactgagacaggagaggtttgtttggaagaa-gggttcag 506
Query: 307 cgtgaacgaggggaggggaggcactgaagggctggatgcaagcagaagacactaaatggc 366
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 catgaacgaggggaggggaggcactgaagggctggatgcaagcagaagacactaaatggc 566
Query: 367 ctggattagttacctctctattgcgatagaacaccaagaccaaggaagtttatagaagaa 426
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 567 ttggattagttacctctctattgcgatagaacaccaagacaaaggaagtttatagaagaa 626
Query: 427 agggtttatttgagctgatggtttctgaagatgagactccaccag 471
||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 627 agggtttatttgagctgatggtttctgaagatgagactctaccag 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_g09.g1 MSMg01no407_g09.g1 CHROMAT_FILE:
MSMg01no407_g09.g1 PHD_FILE: MSMg01no407_g09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:02 2005
(559 letters)
>mm_chr13_71811557_71812515
Length = 959
Score = 1073 bits (555), Expect = 0.0
Identities = 558/559 (99%)
Strand = Plus / Minus
Query: 1 tctaagtctctttgcaagatgggggtttgaaagccacctattataaaggtctttgatatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tctaagtctctttgcaagatgggggtttgaaagccacctattataaaggtctttgatatc 700
Query: 61 actgaggaggacagactctggaaggacagttctaggggttccaggagacattcaataata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 actgaggaggacagactctggaaggacagttctaggggttccaggagacattcaataata 640
Query: 121 agactggaagagccactgacaaagagacctttaacaactctcagtcagagagaggaagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 agactggaagagccactgacaaagagacctttaacaactctcagtcagagagaggaagca 580
Query: 181 aagggccagcagctgataaggatccaaggaagagcctgaacttagaaagtgtgttgtggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aagggccagcagctgataaggatccaaggaagagcctgaacttagaaagtgtgttgtggc 520
Query: 241 agtctgctggaggaggagactctccaactcctcaaaacctcaaacacagaaagacaaccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 agtctgctggaggaggagactctccaactcctcaaaacctcaaacacagaaagacaaccc 460
Query: 301 aaaatctaatgtgtagagtgggaaattgccggttccttcctcaaatctgactgagcgata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aaaatctaatgtgtagagtgggaaattgccggttccttcctcaaatctgactgagcgata 400
Query: 361 acaatgtagtaccagaagagaaatcacacccaacacatccccacagcctgttgcagatga 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 399 acaatgtagtaccagaagagaaatcacacccaacacatcctcacagcctgttgcagatga 340
Query: 421 gagctgcagtactcaacatcaacaaatccaaacccatgttgtgcttagagaccacagtga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gagctgcagtactcaacatcaacaaatccaaacccatgttgtgcttagagaccacagtga 280
Query: 481 agccttctgcagtaaatacacacaagtctgctctctgagagaagatggatggcaatttca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 agccttctgcagtaaatacacacaagtctgctctctgagagaagatggatggcaatttca 220
Query: 541 gcaatcccctggtttagcc 559
|||||||||||||||||||
Sbjct: 219 gcaatcccctggtttagcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
