BAC Information

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BAC

Clone NameMSMg01-407J16
Chromosome13 (Build37)
Map Location 16,422,790 - 16,423,249
singlet/doubletsinglet
Overlap genenone
Upstream geneEG625121, Gli3, LOC665157, Inhba, LOC625181
Downstream geneLOC665191, 5033411D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407J16.T7 (MSMg01no407_j16.b1)MSMg01-407J16.TJ (MSMg01no407_j16.g1)
ACCAG505524AG505525
length746760
length of high quality
(start - end)
195 (95 - 289)461 (76 - 536)
definitionCHROMAT_FILE: MSMg01no407_j16.b1 PHD_FILE: MSMg01no407_j16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:17 2005CHROMAT_FILE: MSMg01no407_j16.g1 PHD_FILE: MSMg01no407_j16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGCGGAATT
CTCACCTGAGGATACCGAATGGCTGAGAACACCTGAAAAATGTTCAGTAT
CCTTAATCATCAGGGAAATGCAAATCANAACAACCCTGAGATTCCACCCT
CACACCAGTCAGAATGGCTAAAATAAAAAATCCAGGTGACAGCAGATGCT
GGTGAGGATGTGGAGAGAGAAGAACACTCCACCATTGTTGGTAAGATTCC
AAACTGGTACAACCATTCTGGAAATCAGTCTGGTGAGTCCTCAGAAAATT
GGACATAGTACTATGTGAGGATCCATCTGTACCACTCCTGTGCACATACC
CAAAAGATGCTCCAACATATAACAAGGACACATGCTCCACTATGTTCATA
GCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGTACCCACATGTCCCTC
ATTAAAGGAATGGATACAGAATATATGATACAATTACACAATGTAATACT
GCTCATCTATTAAAAATAATGAATTTATGAAATTCCTAGGCAAATGTATG
GACCTCGAGGGCATCATCCTGAGTGATGTAACCCAATCTCTATAGAACTC
ATTTGAAATGTACTCATTGATAAATTGATTATTTATCCCACAAACTTTAT
AAACCTAAGTAACTAGATACTACTTTGCATATACCCTTGTAACTCATGTA
TTAATGATTATCCTAGCGTTCTACACTTTTGCTCCTTTCTAAAAAT
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAATATTAGTTCATATCATCGGGTG
ACATGTGTATGTATAATAAAAAACATATACATTGAGTCCATGGAATTCTA
AGTCATGAACAAGGCTACTCTGCTGGCTGCAGATTCTTCCTATGAACAAT
AAATTCAAGAATATTAGACCTAGTAGTATGGAGCTAGTCAAAAAAGGCAG
TGCTAACAGGGCAGAAGTGTCCCTAAAATGGTAGGGACGCTTTAAGAAAA
TGGAACTGTGCTGTGAATCTTATACTTACATGAGGATTCATTGATCAGAT
ACTTATATGATGTTTTATATGGGCCAAGTATGCTCTTAGCTTTTGAAATG
TTAATCTGCATCATTCCAAGAGTCCTGTGAGTTATATAGTTTGGGTCTTA
TTTTTATTTAACACGTAAAAAGTTTGGAGAACAGGTAGATGAGGCCACAT
CACCCTAATAGGAGGAAAAAAAAATCAGGGTTCAAGTTAGGCTTAAACTT
AATTAAATCACCATGTTATCTTTCTAGTAACAGGAAGTTATAGTCAGTAG
AAGACTTTCTAGATCTATCTTGGCAGGTCTTTTTATATGCTCCCACCAAG
ACCATTAAACCCTTTTTCAAGATTCTCACCATAAAATTAAAACAAATTGA
CTCACCAATGGTGTCGTCTTTTTCTTTCCCCCTTTTTTTTCCTCAATTCA
ATAAAAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_j16.g1 MSMg01no407_j16.g1 CHROMAT_FILE:
MSMg01no407_j16.g1 PHD_FILE: MSMg01no407_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:17 2005
         (461 letters)



>mm_chr13_16422590_16423449
          Length = 860

 Score =  845 bits (437), Expect = 0.0
 Identities = 455/461 (98%), Gaps = 1/461 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatattagttcatatcatcgggtgacatgtgtatgtataataaaaaacatatacattga 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 660 aaatattagttcatatcatcgggagacatgtgtatgtataataaaaaacatatacattga 601

                                                                       
Query: 61  gtccatggaattctaagtcatgaacaaggctactctgctggctgcagattcttcctatga 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 600 gtccatggaattctaagtcatgaacaaggctactctgctggcttcagattcttcctatga 541

                                                                       
Query: 121 acaataaattcaagaatattagacctagtagtatggagctagtcaaaaaaggcagtgcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 acaataaattcaagaatattagacctagtagtatggagctagtcaaaaaaggcagtgcta 481

                                                                       
Query: 181 acagggcagaagtgtccctaaaatggtagggacgctttaagaaaatggaactgtgctgtg 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 480 acagggcagaagtgtccctaaaatggtagggacactttaagaaaatggaactgtgctgtg 421

                                                                       
Query: 241 aatcttatacttacatgaggattcattgatcagatacttatatgatgttttatatgggcc 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aatctta-acttacatgaggattcattgatcagatacttatatgatgttttatatgggcc 362

                                                                       
Query: 301 aagtatgctcttagcttttgaaatgttaatctgcatcattccaagagtcctgtgagttat 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagtgtgctcttagcttttgaaatgttaatctgcatcattccaagagtcctgtgagttat 302

                                                                       
Query: 361 atagtttgggtcttatttttatttaacacgtaaaaagtttggagaacaggtagatgaggc 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 301 atagtttgggtcttatttttatttaacatgtaaaaagtttggagaacaggtagatgaggc 242

                                                    
Query: 421 cacatcaccctaataggaggaaaaaaaaatcagggttcaag 461
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cacatcaccctaataggaggaaaaaaaaatcagggttcaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 860
Length adjustment: 10
Effective length of query: 451
Effective length of database: 850
Effective search space:   383350
Effective search space used:   383350
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)