BAC Information

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BAC

Clone NameMSMg01-407L17
Chromosome13 (Build37)
Map Location 119,065,526 - 119,066,217
singlet/doubletsinglet
Overlap genenone
Upstream geneEG623365, LOC382807, Hcn1, LOC100041695, LOC674926
Downstream geneMrps30, LOC668309, LOC100041278, Fgf10, LOC100041298, LOC100041757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407L17.T7 (MSMg01no407_l17.b1)MSMg01-407L17.TJ (MSMg01no407_l17.g1)
ACCAG505619AG505620
length742779
length of high quality
(start - end)		696 (45 - 740)261 (82 - 342)
definitionCHROMAT_FILE: MSMg01no407_l17.b1 PHD_FILE: MSMg01no407_l17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:27 2005CHROMAT_FILE: MSMg01no407_l17.g1 PHD_FILE: MSMg01no407_l17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTTTATCTAGAGTTTTAACATTTATCTTTACAGAAGATATTTTCA
TGAAGATAAATTTTGTAATCATCATTTTAAAAAAATCATAAAAGAGAGTT
ACATCAACAAATTTTTTAATTAGTTTTAAAAATGACTCTTTCACCATCTT
TTTTTTTTTTAGAAGAATTTTGTTGGGGGATATGTCTTGAAAGTCCACTT
TCTATGAAGAGACAAGTTCAAGAATAAGGCAATCAAAATATCCTCATGGA
ATATAGGTTATCTTTCCGTGCACAATAGGGTCAAAAATAATTAAGCTTTG
ATTTCTGATATTCACAATTGAATTTGATATATAGGTATGGTCCCTTATCT
TCCCCCATGTAATGTGAGTAAGAGGCACTGATACGTCCACAGCAATTATA
CACATGGTTCATTTCCCTTTAGCAAAACTGTTCTGCTACTTGAAATTCAA
ATAATAAATTTAGCATTTTGTATATATAAAGTGTCTATGAAACCCTAAAG
AAAAGGTACCTCTTCACTTGTGGGGAAGGCGAAGATGAATCTCCAGGAGC
AGCTAATACTTGGGTTGAGGCTTCAAAACTGGAAAAAAAAAATAGCTGGT
TAAGTTGCTTAGTGATCAGTGCAAACAATGACATAGTCAAGAGGAAATCA
CAAGCTGTGTGATAGAGACAGAGAACAGGAAGCACAAAAGAA

CATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAGTAAAGATCAAGCAAAAAA
ACCAACCCAATTTAAAAAAAAAAAGGGCTGTGAGGTTGAACAGAAATTTC
TTAAAAGCAGAATTACAAATGGATGTTAAACACTATAAAAGGTATTCAGG
TATCCTTAGACAGCAAAGAAAATTGTAGATTAGAATTATGGCAATGTTTT
GAAGTCTTTCTTCCTTTGGAGCATTAATGATTGTTTTTGTTGTTGTTGTT
GTTTGTTTGTTTGTTTTTGCTCTTGTTTTTGGCTTTTGAAGACAGGGTTC
CTCATATAGCCCTGGCTGTCCTGGAACTCACTCTGTAAAACAGTCTGTTC
TTGATCTCAGAAATCTGCCGGCCTCTGTCTCTCATGTGATGGGATTAAAG
TAATGTGTCACCACTGTCCAGCTGTATTAATGATTCTTTATGTCTCAGAA
AAAACTATTTCTACGAAAATCTCTGGTATATTTTATTTAAAACAATTCCT
TAGCATTCCCATTGTTAATTATTCAGCTAGGTTTACTTTGTTGTCTACTG
GACTATTAGTCATTTTTTTTAAGAACACCCCTGGCCTTTCTTATTCAATG
AATATTTTGGGTTTTTTTTTTCTATATTTGTCTTTTTTTACTCTCCCTCC
TTTAAGTAATTTCTTGTCTTGTACCCCATTATCATCATTTCCTCATTTTT
TTTAAATATTTCTTAGAGCTGCTTACTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_l17.b1 MSMg01no407_l17.b1 CHROMAT_FILE:
MSMg01no407_l17.b1 PHD_FILE: MSMg01no407_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:27 2005
         (696 letters)



>mm_chr13_119065322_119066417
          Length = 1096

 Score = 1330 bits (688), Expect = 0.0
 Identities = 691/692 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtttatctagagttttaacatttatctttacagaagatattttcatgaagata 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 gaattctgtttaactagagttttaacatttatctttacagaagatattttcatgaagata 837

                                                                       
Query: 65  aattttgtaatcatcattttaaaaaaatcataaaagagagttacatcaacaaatttttta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 aattttgtaatcatcattttaaaaaaatcataaaagagagttacatcaacaaatttttta 777

                                                                       
Query: 125 attagttttaaaaatgactctttcaccatcttttttttttttagaagaattttgttgggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 attagttttaaaaatgactctttcaccatcttttttttttttagaagaattttgttgggg 717

                                                                       
Query: 185 gatatgtcttgaaagtccactttctatgaagagacaagttcaagaataaggcaatcaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gatatgtcttgaaagtccactttctatgaagagacaagttcaagaataaggcaatcaaaa 657

                                                                       
Query: 245 tatcctcatggaatataggttatctttccgtgcacaatagggtcaaaaataattaagctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tatcctcatggaatataggttatctttccgtgcacaatagggtcaaaaataattaagctt 597

                                                                       
Query: 305 tgatttctgatattcacaattgaatttgatatataggtatggtcccttatcttcccccat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tgatttctgatattcacaattgaatttgatatataggtatggtcccttatcttcccccat 537

                                                                       
Query: 365 gtaatgtgagtaagaggcactgatacgtccacagcaattatacacatggttcatttccct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gtaatgtgagtaagaggcactgatacgtccacagcaattatacacatggttcatttccct 477

                                                                       
Query: 425 ttagcaaaactgttctgctacttgaaattcaaataataaatttagcattttgtatatata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ttagcaaaactgttctgctacttgaaattcaaataataaatttagcattttgtatatata 417

                                                                       
Query: 485 aagtgtctatgaaaccctaaagaaaaggtacctcttcacttgtggggaaggcgaagatga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aagtgtctatgaaaccctaaagaaaaggtacctcttcacttgtggggaaggcgaagatga 357

                                                                       
Query: 545 atctccaggagcagctaatacttgggttgaggcttcaaaactggaaaaaaaaaatagctg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 atctccaggagcagctaatacttgggttgaggcttcaaaactggaaaaaaaaaatagctg 297

                                                                       
Query: 605 gttaagttgcttagtgatcagtgcaaacaatgacatagtcaagaggaaatcacaagctgt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gttaagttgcttagtgatcagtgcaaacaatgacatagtcaagaggaaatcacaagctgt 237

                                           
Query: 665 gtgatagagacagagaacaggaagcacaaaag 696
           ||||||||||||||||||||||||||||||||
Sbjct: 236 gtgatagagacagagaacaggaagcacaaaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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