BAC Information

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BAC

Clone NameMSMg01-407M14
Chromosome13 (Build37)
Map Location 103,149,773 - 103,150,067
singlet/doubletsinglet
Overlap genenone
Upstream genePik3r1
Downstream geneCd180, Mast4, EG621312, EG432800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407M14.T7 (MSMg01no407_m14.b1)MSMg01-407M14.TJ (MSMg01no407_m14.g1)
ACCAG505660AG505661
length772793
length of high quality
(start - end)		487 (45 - 531)419 (75 - 493)
definitionCHROMAT_FILE: MSMg01no407_m14.b1 PHD_FILE: MSMg01no407_m14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:32 2005CHROMAT_FILE: MSMg01no407_m14.g1 PHD_FILE: MSMg01no407_m14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGAGGATTGATCCTTATGCTTGCCACCAAGCCTTCCTGTGCTTAG
TTTAGTATTGCTTTCTGATTCAACTGTTTCACAAATGGGGAATCTTTTTT
AAAAACTTTATTGCATATCTATCTATCTATCTATCTATCTATCTATCTAT
CTATCTATCTATCTATCTATCTATCTATCTATCTACTTATTTTGTATGTG
TGCATATGAGTCTGAATGCATGTGACAGGAATCCTGTGGAGGTCAGAGGA
CATCTTGCAGGAGTTGTTTCTCTTCTCCTACCACATGGGTCCCAGGGATA
GAATATATGTTGTCAACCTGCTTAGCAAGCATTTTTATCCCTGAGCTATC
TTGCCATCCCAGAATTGTATTTTCTACTTTCCATTGTTAACCCATTTGCA
CAAGATCTTACTGTACATATACTTTATAATGGTACTTTGCTAAATACCAC
ACTAGNCTTCTGTATTCTTTTTCATTATCAAATAATAAATGCTTCCGTTC
AATTTTTTGGTTTTGTTTTTGGTTTTTTGGNTTTTTGGTTTTCGAGACAG
GGTTTCTCTGTGTAAGCCTGGCTGTCCTGGCNCTCACTTTGTAGACCAGG
CTGGGCTCCAACTCAAAAATCCGCCTGCCTCTGCTTCTCGAGGGGTGGGA
ATAAAGGGGGGGGGCTACCCGCCGGCCTTTCCGTTCAATTTTTGAAGGGA
AAGAAAATATATAAGAAAAACA

AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTACATTTGGGAAGTTTTCTTCTAT
AATTTTGTTGAAGATATTTGCTCGCCCTTTAAGTTGAAAATCTTCATTCT
CATCTACTCCTATTATCCGTATGTTTGGTCTTCTCATTGTGTCCTGGATT
TCCTGGATGTTTTGAGTTAGGATCTTTTTGCATTTTTTATTTTCTTTGAT
TGTTGTGCTGATGTTGTCTATGGAATCTTCTGCACCTGAGATTCTCTCTT
CCATCTCTTGTATTCTGTTGCTGATGCTTGCATCTATGGTTCCAGATTTC
TTTCTTAGGTGTTCTATCTCCAGCGTTGCCTCACTTTGGGTTTTCTTTAT
TGTGTCTACTTCTCTTTTTAGGTCTTGGATGGTTTTATTCAATTCCATCA
CCTGTTTGGNTGTGTTTTCTTGCAATACTTTAAGGGATTTTTGTGCTTCC
TCTTTAAAGGCTTCTACCTGTCCAGCAGTGTTTTCCTGGATTTCCTTAAT
GACTTAATAAAAGCCTTTTTGGATGCCCCTAACCTCATCTCGAAAATGGT
TTTTTAAACTCGGGCCTAGTTTTTTGGGGGGGCGCGCGACGCGTCTATCA
TTTTCCCTTTTTTTTTTTTTTCCATTCTCTTCACGTTCCACTCCTGTTCT
GTCCTGCTGTTGTTTTCTTCCTATTCCTTTGCACTTTTTTTTCACTTTTT
TGACCCATGTCCCTTCTTTCTCTATGCTTGTAGGTGTCCACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_m14.b1 MSMg01no407_m14.b1 CHROMAT_FILE:
MSMg01no407_m14.b1 PHD_FILE: MSMg01no407_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:32 2005
         (487 letters)



>mm_chr13_103149207_103150093
          Length = 887

 Score =  505 bits (261), Expect = e-147
 Identities = 287/296 (96%), Gaps = 2/296 (0%)
 Strand = Plus / Minus

                                                                       
Query: 193 ttattttgtatgtgtgcatatgagtctgaatgcatgtgacaggaat-cctgtggaggtca 251
           ||||||||| |||||||||||| ||||||||||||| |||||| || |||||||||||||
Sbjct: 861 ttattttgtgtgtgtgcatatgtgtctgaatgcatgcgacagg-atgcctgtggaggtca 803

                                                                       
Query: 252 gaggacatcttgcaggagttgtttctcttctcctaccacatgggtcccagggatagaata 311
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gaggacatcttgcaggagttggttctcttctcctaccacatgggtcccagggatagaata 743

                                                                       
Query: 312 tatgttgtcaacctgcttagcaagcatttttatccctgagctatcttgccatcccagaat 371
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tatgttgtcagcctgcttagcaagcatttttatccctgagctatcttgccatcccagaat 683

                                                                       
Query: 372 tgtattttctactttccattgttaacccatttgcacaagatcttactgtacatatacttt 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tgtattttctactttccattgttaacccatttgcacaagatcttactgtacatatacttt 623

                                                                   
Query: 432 ataatggtactttgctaaataccacactagncttctgtattctttttcattatcaa 487
           |||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 622 ataatggtactttgctaaataccacactggtcttctgtattctttttcattatcaa 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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