Query= MSMg01no407_o16.b1 MSMg01no407_o16.b1 CHROMAT_FILE:
MSMg01no407_o16.b1 PHD_FILE: MSMg01no407_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:43 2005
(634 letters)
>mm_chr13_80775816_80776849
Length = 1034
Score = 1180 bits (610), Expect = 0.0
Identities = 628/634 (99%)
Strand = Plus / Plus
Query: 1 tgtcaactagagtgcatcaaatgttagccagttgccataaattcctctgattttacatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcaactagagtgcatcaaatgttagccagttgccataaattcctctgattttacatat 260
Query: 61 agtattgtgctttaaataatgtagctttacctgtcttcattattgtgctttgaacacatc 120
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcattgtgctttaaataatgtaactttacctgtcttcattattgtgctttgaacacatc 320
Query: 121 agaggcagatgagtttgcatcgtacatagctcagtctaaggcacaaaatgttgaagcaaa 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaggcagatgagtttgcatcctacatagctcagtctaaggcacaaaatgttgaagcaaa 380
Query: 181 gtgtttgtcaccagaaatcttagagatataaattcagcacaaaggattgaagttgaattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtttgtcaccagaaatcttagagatataaattcagcacaaaggattgaagttgaattt 440
Query: 241 cctcctcttgagaaaaggaacttctctttttcagatttatatacattttaataggaatta 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctcctcttgagaaaaggaacttgtctttttcagatttatatacattttaataggaatta 500
Query: 301 actcttcataaatcctgccacatatctcaataggcaacagtcaattggaaagtcaagact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actcttcataaatcctgccacatatctcaataggcaacagtcaattggaaagtcaagact 560
Query: 361 gtcttttctcacgtgtagctcatctgtgactcatcacttgcctctaacttctctaagcaa 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcttttctcacatgtagctcatctgtgactcatcacttgcctctaacttctctaagcaa 620
Query: 421 agtaaatggacattagagaataagcataaacaggttgacagtagagtgagaacatttgtt 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 agtaaatggacattagagaataagcataaacaggttgacagtagagtgagaacacttgtt 680
Query: 481 atttggggacagatacttcagaacttacacgaataggtgcacaatgccaaatcaacaaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atttggggacagatacttcagaacttacacgaataggtgcacaatgccaaatcaacaaca 740
Query: 541 aattacctacatgagttcataaatgcattttatatgtaataacaaaataagtggttcact 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aattacctacatgagttcataaatgcattttatatgtaataacaaaataagtggttcact 800
Query: 601 atcagtctcatttgtgtctttacccaaatggctc 634
||||||||||||||||||||||||||||||||||
Sbjct: 801 atcagtctcatttgtgtctttacccaaatggctc 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_o16.g1 MSMg01no407_o16.g1 CHROMAT_FILE:
MSMg01no407_o16.g1 PHD_FILE: MSMg01no407_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:43 2005
(498 letters)
>mm_chr13_80926680_80927577
Length = 898
Score = 832 bits (430), Expect = 0.0
Identities = 474/498 (95%), Gaps = 20/498 (4%)
Strand = Plus / Minus
Query: 1 ctatggtcctatgctttcaggaattatacatgggtccttttgatcctagtgctgtatgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ctatggtcctatgctttcaggaattatacatgggtccttttgatcctagtgctgtatgac 605
Query: 61 ttgaacctgactactgaagttaaaggatacagcctataaaaatctctaaaacaatgtatt 120
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 604 ttgaacctgactacttaagttaaaggatacagcttataaaaatctctaaaacaatgtatt 545
Query: 121 attcattcaagaatagacaatatataaaataataagtaaaataataaataaaataaagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 attcattcaagaatagacaatatataaaataataagtaaaataataaataaaataaagta 485
Query: 181 tagatgaatatttcattcaaggtatttattaaaatagtcagatattttaactaatggtta 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tatatgaatatttcattcaaggtatttattaaaatagtcagatattttaactaatggtta 425
Query: 241 aagtttttttatacacaagtggtaatttaattctataaaaatatcaattatttttatttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aagtttttttatacacaagtggtaatttaattctataaaaatatcaattatttttatttt 365
Query: 301 tgtttcatgtgtaagagtgtggttttgaattgcatgtgtgcctcgtgcctgaggaagcca 360
||||| || || | ||| || |||||||||||||||||||||||||
Sbjct: 364 tgttt----tg-aa-a--------ttg---tg---gtgtgcctcgtgcctgaggaagcca 325
Query: 361 gaagaggcaattagatcctttggaactggattatagatggttttgagctgccacatggat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaagaggcaattagatcctttggaactggattatagatggttttgagctgccacatggat 265
Query: 421 tctaggaaccaaacccaggtcttcagcaagaaagcaagttctcttaacctctgggtcatt 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 264 tctaggaaccaaacccaggtcttcagtaagaaagcaagttctcttaacctctgggtcatt 205
Query: 481 tatattcccagattactt 498
||||||||||||||||||
Sbjct: 204 tatattcccagattactt 187
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
