BAC Information

Click to search

BAC

Clone NameMSMg01-408I13
Chromosome13 (Build37)
Map Location 15,100,670 - 15,101,181
singlet/doubletsinglet
Overlap genenone
Upstream geneTbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1, Mrpl32, Psma2, AW209491, EG665099
Downstream geneLOC670994, EG625121, Gli3, LOC665157
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408I13.T7 (MSMg01no408_i13.b1)MSMg01-408I13.TJ (MSMg01no408_i13.g1)
ACCAG506230AG506231
length767758
length of high quality
(start - end)
499 (43 - 541)513 (70 - 582)
definitionCHROMAT_FILE: MSMg01no408_i13.b1 PHD_FILE: MSMg01no408_i13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:32 2005CHROMAT_FILE: MSMg01no408_i13.g1 PHD_FILE: MSMg01no408_i13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCATCTTTACGTTATAGCTGCCATGCCTGCTTCTACATAATGGTGATG
AACTCTTTTACCCCTGGAACTGTACGCTCAGATAAATGCACCCGTAAGAT
ATCTGACTATAATTATTTGCTCTTTGAGAAATGTTGAAGACTTGTATCTT
TGGACTAGAAAACCAGTTGAACATTATAAGAGGTTGTAGGCTATACAAGC
AGGAGCTTGGAAGACAGAAGTGCTAAGAACTCTGTGGACTGTAAAGGCCC
AGTTCAAGAGGCTTCATATAGGACCAGTATTGGCAACTGAGCTAGAGTTT
ATTCCTGTGATATTTTAACACTCCCCGCCCACATCTAAAAATGTAGTTAC
CCTATGCCCATGGCCTAATAACTTGCTCAAGGCTAAATTTATATTTTAAA
TTTTAAATTGAAAAATAATTTCCTAATGGAGAAGTTTCAAACAGCTTAAT
ATTGACTTTGTCCTGTGGTAATTACTAATCATACTTGTGCAGGTCAANCA
ATAAAAAGAAATAACCAGGCNGAATAAAATACAAATAGTACAGTTTGGAT
AGAAAAAGAACCTATCAACAATGTTTCCGTTAAAGTTTCTGCTGAAGAAA
AGGTGAAATGTTTTTTTTTTATTTTTAAATCCCTTTTATTTTATTAAGGA
TTTTCTCCTTTAACTTCCAGGGGACCCCAAAGTCCCCTTCCTTGCCCCCT
CCCAACCCAGAATCCAG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAAGGTTTTTTTAAAATGAAAAACATTACAA
GAATTATTTTTAAACTTGGGTCTTGCTTTTAAACAAATATGACACATGCC
ATTTAAAAACTTCAAGATGAGAGAATTAAAGAAATATCCTTGTAATTAAA
ATAGATGATTTCAATCTTCCAGTGAGTACTTAAACATCCACAGGAGCCTG
GGGAGTAAACGAGGAGGTTTTGTTGTTGCTTATTTTTAGATCTCATTTGT
TTTTCTCTTTTATTCCAAAAGGGTAACTGCAACCATTCTCCAAGTCCTTG
GTATGTATGAGGACCTAGTCTCTGCATGTTTTCCAATTTGCTTGGAATAG
GAAGGTGTTCTCTAGCAGTTGAAACAGACATCTCTTTCGCACTATCTGTC
AGGTCATGTTAATTAACTGGATGAGCCTCAAATACTAAACCCACAATGAC
TTATCTCTTATTCTTCCTGGACAAATACCCATCCATTAGTGTTGCCAGGG
TCCTCTGATCTCCAGAGTTATTTTAAGTAGCCACCATCTAGATCTTAGAA
ACAGAGATATCCTGTATAAAGAGAGCTCTGGAATGACTCCAATGAAATGC
TTATTCCTAAACCAATCCACAAGAAACATTGGGCAACAAGAGTCTCATTA
TTTTAAGGTACAATATTACTATGCCCCCCAAAAATTCTGTAAAAACCTGT
TTACCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_i13.g1 MSMg01no408_i13.g1 CHROMAT_FILE:
MSMg01no408_i13.g1 PHD_FILE: MSMg01no408_i13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:32 2005
         (513 letters)



>mm_chr13_15100470_15101381
          Length = 912

 Score =  953 bits (493), Expect = 0.0
 Identities = 508/513 (99%), Gaps = 1/513 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaggtttttttaaaatgaaaaacattacaagaattatttttaaacttgggtcttgcttt 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagg-ttttttaaaatgaaaaacattacaagaattatttttaaacttgggtcttgcttt 259

                                                                       
Query: 61  taaacaaatatgacacatgccatttaaaaacttcaagatgagagaattaaagaaatatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 taaacaaatatgacacatgccatttaaaaacttcaagatgagagaattaaagaaatatcc 319

                                                                       
Query: 121 ttgtaattaaaatagatgatttcaatcttccagtgagtacttaaacatccacaggagcct 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttgcaattaaaatagatgatttcaatcttccagtgagtacttaaacatccacaggagcct 379

                                                                       
Query: 181 ggggagtaaacgaggaggttttgttgttgcttatttttagatctcatttgtttttctctt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 380 ggggagtaaacgaggaggttttgttgttgcttatttttagatctcatttgtttttctcct 439

                                                                       
Query: 241 ttattccaaaagggtaactgcaaccattctccaagtccttggtatgtatgaggacctagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttattccaaaagggtaactgcaaccattctccaagtccttggtatgtatgaggacctagt 499

                                                                       
Query: 301 ctctgcatgttttccaatttgcttggaataggaaggtgttctctagcagttgaaacagac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctctgcatgttttccaatttgcttggaataggaaggtgttctctagcagttgaaacagac 559

                                                                       
Query: 361 atctctttcgcactatctgtcaggtcatgttaattaactggatgagcctcaaatactaaa 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atctctttcacactatctgtcaggtcatgttaattaactggatgagcctcaaatactaaa 619

                                                                       
Query: 421 cccacaatgacttatctcttattcttcctggacaaatacccatccattagtgttgccagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cccacaatgacttatctcttattcttcctggacaaatacccatccattagtgttgccagg 679

                                            
Query: 481 gtcctctgatctccagagttattttaagtagcc 513
           | |||||||||||||||||||||||||||||||
Sbjct: 680 ggcctctgatctccagagttattttaagtagcc 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 912
Length adjustment: 10
Effective length of query: 503
Effective length of database: 902
Effective search space:   453706
Effective search space used:   453706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)