BAC Information

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BAC

Clone NameMSMg01-408I14
Chromosome13 (Build37)
Map Location 49,702,145 - 49,702,606
singlet/doubletsinglet
Overlap geneCenpp
Upstream geneAW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Tes3-ps, Ecm2, Aspn, Omd
Downstream geneOgn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408I14.T7 (MSMg01no408_i14.b1)MSMg01-408I14.TJ (MSMg01no408_i14.g1)
ACCAG506232AG506233
length767780
length of high quality
(start - end)		498 (42 - 539)462 (71 - 532)
definitionCHROMAT_FILE: MSMg01no408_i14.b1 PHD_FILE: MSMg01no408_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:33 2005CHROMAT_FILE: MSMg01no408_i14.g1 PHD_FILE: MSMg01no408_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTCTTGTACCTGCCATAAGGCTTGTTTACTAGTTAGGTGCAGTGGAAG
CCAGCGCCATCTTATAATGGCGATTGCTCACGGCACGCACGCGATTGCTC
GAGGCATGGCTCTCCACAATAAATCTTTGGGCCGGAGCAAGAAGGATTTA
CCAGAGCAAGCAGGGTTGAGCAGGACTGACTGGAACGAGCAGAAGTCCTA
AAGTCAATTCCCAACAACCAGATGAAGGCTCACAACTATCTGTACAGCTA
CAGTGTGTTCTCATATACATAAAATAAATAAATAAATCTTTTTTTTAAAA
AGCACAAAAAATTAATGAGACCTCGTGAATCTGAAATGTTTCTGCAAGGC
AGAGGGCACACCACTGATAGGACAAAATAGCAGCCTATACCATCAGAAAA
GATCCTCACCAACCTAATATCTGATAGAGAGCTAATATCCAAAATATATA
TTGAAAAACTCAAGAAATTAGACACAAATAAACCATTATAAAATGAGGTA
CATCCCAGGCTGGCCTTGAACTCATGATCCTCCTGCCTCTGCCTCCTTTA
GCAATCCTACTGGGGTGAGCCACCACAAACCTATTAGTATACATAAGTGA
CCCCGAAAATCCCTGAGAGAACTCCACCGCTGAAAAACATTTCGCCAAAG
GGGGGGAATACAAATTATTTCTACAAATCCGAAGGTTTCTCTCCCCCAAA
GAAAAAGTGGCTAAGAA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTATCCTCTGTCTCTCACTCTCAAGTGTT
AAAATTATAAGTATTTGAGACTTTAAAGATGCTTACATGGTATCTATGCT
ACTACTTCAGTTTTGTTTTGTTTTTGTTTGTTTACTTGCTTGTTTTTTTA
AGACAGGGTCTCATTATGTAGCTCTGGATGGTCTGGAACTCAGTGTAGAC
TAGACTAACAGGGATCCACCTGTCTATATTTCCTGGGTGCTGGAATTAAA
GGTGTTTACCACTACTCCCTCTCCCTACTTTAGTTTTCCAAAATTGAATA
TAAAATTTCATTCAGTAAAATTTTTTGCTATTACAAAATTTTGGAATCAA
ACTTCTTTTTAAAAGCTATTTCACAATTCTATGAACTAAAAAAAAGGAAT
TTAAAACCAAAATGCAGCCAAGCAGTGATGGCACAAACCTTTAATCCCAC
ACTCAGGAGGCAGAGGCAAGTAGATCTCTGAGTCCAAGGCCAGCCTGTTC
TGTACAGTGAGTTCCAAGACAGCCAAGGCTACATAGAGAAACCCTAGCTT
GAACGATCTCCTCCCGAATTACCTATCATGAATGACCCCCTCCGCAAAAA
CTGTTTTCTTTTTCACTTCCACCCCCTCCCTTATAGGACAATTCCTTAAA
ATAATTTGCTTTAAAACTTACTTTTACATAATCCCTTTTTTTAGTTATTA
CCATAACTTATTGGGACAAAAAAACCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_i14.g1 MSMg01no408_i14.g1 CHROMAT_FILE:
MSMg01no408_i14.g1 PHD_FILE: MSMg01no408_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:33 2005
         (462 letters)



>mm_chr13_49701945_49702806
          Length = 862

 Score =  862 bits (446), Expect = 0.0
 Identities = 458/462 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatcctctgtctctcactctcaagtgttaaaattataagtatttgagactttaaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctatcctctgtctctcactctcaagtgttaaaattataagtatttgagactttaaagat 260

                                                                       
Query: 61  gcttacatggtatctatgctactacttcagttttgttttgtttttgtttgtttacttgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttacatggtatctatgctactacttcagttttgttttgtttttgtttgtttacttgct 320

                                                                       
Query: 121 tgtttttttaagacagggtctcattatgtagctctggatggtctggaactcagtgtagac 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtttttttaagatagggtctcattatgtagctctggatggtctggaactcagtgtagac 380

                                                                       
Query: 181 tagactaacagggatccacctgtctatatttcctgggtgctggaattaaaggtgtttacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagactaacagggatccacctgtctatatttcctgggtgctggaattaaaggtgtttacc 440

                                                                       
Query: 241 actactccctctccctactttagttttccaaaattgaatataaaatttcattcagtaaaa 300
           ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actacacccactccctactttagttttccaaaattgaatataaaatttcattcagtaaaa 500

                                                                       
Query: 301 ttttttgctattacaaaattttggaatcaaacttctttttaaaagctatttcacaattct 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttttgctactacaaaattttggaatcaaacttctttttaaaagctatttcacaattct 560

                                                                       
Query: 361 atgaactaaaaaaaaggaatttaaaaccaaaatgcagccaagcagtgatggcacaaacct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgaactaaaaaaaaggaatttaaaaccaaaatgcagccaagcagtgatggcacaaacct 620

                                                     
Query: 421 ttaatcccacactcaggaggcagaggcaagtagatctctgag 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaatcccacactcaggaggcagaggcaagtagatctctgag 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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