BAC Information

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BAC

Clone NameMSMg01-408I17
Chromosome13 (Build37)
Map Location 31,388,048 - 31,388,423
singlet/doubletsinglet
Overlap genenone
Upstream geneAgtr1a, Uqcrfs1, Dusp22, LOC666443, Irf4, Exoc2, Hus1b, EG432743, LOC100041257, LOC100041266
Downstream geneG630018N14Rik, LOC100042491, Foxq1, LOC100041312, Foxf2, Foxc1, 4930548F15Rik, Gmds, LOC666212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408I17.T7 (MSMg01no408_i17.b1)MSMg01-408I17.TJ (MSMg01no408_i17.g1)
ACCAG506238AG506239
length796788
length of high quality
(start - end)		421 (41 - 461)487 (70 - 556)
definitionCHROMAT_FILE: MSMg01no408_i17.b1 PHD_FILE: MSMg01no408_i17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:33 2005CHROMAT_FILE: MSMg01no408_i17.g1 PHD_FILE: MSMg01no408_i17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TATGTTGATTCAATATACAACAGAAAATAAATGTAAAATCTGAATAATTT
GACAGATATAAATCTGAGGTATTTGAGGTTTCTAAAAATGATACTGTGAA
ATTTATTGGACTGGGTACCATACACTGAGTTATACTTACACTAAGGTTCT
ATGTTGAAGCTTTAAATGTATTTTATTATAGTCTTTAAGAAACTGACTAA
TGTTAAATGAAGTCATAACTCTCATCTCACAGGACTGGTGTCTCTACAGA
AGAAATGTTACCAGAGCTCTCTTTTCCTCTCTTCTCACACACATAGAGAA
GGCCATATGAGGACAGTCGGTGAGGTGAGACTCCCAAGGAGGAGTTGACC
TTATACATTGATCTTGCATCTTCAGAACTGTAAGAAAGTGGGTATCTGTT
GTATGGTTCAGTGGTGTTTTTGTGTGCAGACAGAGATAACTAGTATATTA
TGAGTTTATGAAAGACATTTTCTAACCAATAATACTCGTCCAATCAATTG
GGTGAAGAACCCGTTTTTTGATTCCCTCTTAACTGAACATTTGTCCACTT
TTTGGTTATGAACACCTCCTATACCCCTTAATTATTCCTCCCCTTGGAAA
AGGGGCCTACCCCTAAACCTTTTTAAAATAAAAAACCTTTTACCCTCGAA
ATATTGGTGTATGGTTCTAACCAACCGCTATTTTCCTTAATCTCCCCCTC
TTTATATATTCTTCTTTTTTTCATTTCGATTCTATTTTTTCCTTAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAAGC
ACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAA
CTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCC
TCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTC
TGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAGCAAT
ACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACA
CATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGG
AAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTA
CATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGA
AATTCCTAGCCCAATGGATGGAACTGGAGGGCATCATCCCTGAGGGAGGT
TAAACCTTTCCCAAGGAAACTCCCCCATATGGTCTCCCCTGGTAAGTGGA
AATTAACCCCCAAACCCAGGAAATCCCAAAATATAAAAACACATTTCTCT
AACCCTTGGAATTCTTAAAAAAGGAAAATGGAAGTGTGGGCATCTTTGCC
CTCCCTCAAAGAGGAAAAAATAAACCCTTTGTAGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_i17.b1 MSMg01no408_i17.b1 CHROMAT_FILE:
MSMg01no408_i17.b1 PHD_FILE: MSMg01no408_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:33 2005
         (421 letters)



>mm_chr13_31388048_31388868
          Length = 821

 Score =  659 bits (341), Expect = 0.0
 Identities = 367/377 (97%), Gaps = 5/377 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatgttgattcaatatacaacagaaaataaatgtaaaatctgaataatttgaca 64
           |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 376 gaattctatgttgatttaatatacaacagaaaatacatgtaaaatctgaataatttgaca 317

                                                                       
Query: 65  gatataaatctgaggtatttgaggtttctaaaaatgatactgtgaaatttattggactgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gatataaatctgaggtatttgaggtttctaaaaatgatactgtgaaatttattggactgg 257

                                                                       
Query: 125 gtaccatacactgagttatacttacactaaggttctatgttgaagctttaaatgtatttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gtaccatacactgagttatacttacactaaggttctatgttgaagctttaaatgtatttt 197

                                                                       
Query: 185 attatagtctttaagaaactgactaatgttaaatgaagtcataac-tctcatctcacagg 243
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 196 attatagtctttaagaaactgactaatgttaaatgaagtcataacgt-tcatctcacagg 138

                                                                       
Query: 244 actggtgtctctac---agaagaaatgttaccagagctctcttttcctctcttctcacac 300
           ||||||||||||||   ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 137 actggtgtctctacagaagaagaaatattaccagagctctcttttcctctcttctcacac 78

                                                                       
Query: 301 acatagagaaggccatatgaggacagtcggtgaggtgagactcccaaggaggagttgacc 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 77  acatagagaaggccatatgaggacagtgggtgaggtgagactcccaaggaggagttgacc 18

                            
Query: 361 ttatacattgatcttgc 377
           ||||||||||| |||||
Sbjct: 17  ttatacattgagcttgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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