Query= MSMg01no409_c10.b1 MSMg01no409_c10.b1 CHROMAT_FILE:
MSMg01no409_c10.b1 PHD_FILE: MSMg01no409_c10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:24 2005
(247 letters)
>mm_chr13_55838887_55839527
Length = 641
Score = 391 bits (202), Expect = e-113
Identities = 230/242 (95%), Gaps = 6/242 (2%)
Strand = Plus / Minus
Query: 5 tttatccccatttaaaatagctaaggagttcagattatacaggactaagcaccttttaga 64
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 440 tttatccccatttaaaatagcgaatgagttcagattatacaggactaagcaccttttaga 381
Query: 65 ataaaacctctgggggcagggggtgggggggaggaataagatcaaatgtattctgctggc 124
|||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||
Sbjct: 380 ataaaacctctggggg-tgggggtggg-----ggaataagatcaagtgtattctgctggc 327
Query: 125 tacttattataacaaagcctagaagagccctaagcttagcagaacatgtttgtatccttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 326 tacttattataacaaagcctagaagagccctaagcttagcagaacatgtttgtatccaag 267
Query: 185 gcaagatcactgaaggcactctgaaagtgtgtagctcatcttccacaacaataaatgaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gcaagatcactgaaggcactctgaaagtgtgtagctcatcttccacaacaataaatgaaa 207
Query: 245 ca 246
||
Sbjct: 206 ca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 641
Length adjustment: 9
Effective length of query: 238
Effective length of database: 632
Effective search space: 150416
Effective search space used: 150416
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no409_c10.g1 MSMg01no409_c10.g1 CHROMAT_FILE:
MSMg01no409_c10.g1 PHD_FILE: MSMg01no409_c10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:24 2005
(271 letters)
>mm_chr13_55688139_55688812
Length = 674
Score = 250 bits (129), Expect = 9e-71
Identities = 143/149 (95%), Gaps = 3/149 (2%)
Strand = Plus / Plus
Query: 1 caagtctatactgagagactgagtctattgctctcctcaaggcactgtgagcttcaaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagtctatactgagagactgagtctattgctctcctcaaggcactgtgagcttcaaggt 260
Query: 61 tttgaggttgtctttttcctaagtcttcattctgttgtaatagccagcctgcctgtgttt 120
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgaggttgtctttttcccaagtgttcattctgttgtaatagccagcctgcctgtgttt 320
Query: 121 ctttt---ctttttccctttctttctctt 146
||||| ||||||||||||||| |||||
Sbjct: 321 ctttttttctttttccctttcttcctctt 349
Score = 180 bits (93), Expect = 8e-50
Identities = 111/117 (94%), Gaps = 2/117 (1%)
Strand = Plus / Plus
Query: 132 ccctttctttctcttaaggcttttaaaaaaaatgtctggtaaaatagacaaatcatttgc 191
||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 559 ccctttcttcctcttaaggctttt-taaaaaatgtctggtaaaatagacaaaccatttgc 617
Query: 192 tatgttaatcttacagtcaatagttcagtggtgccgggt-gtggtggtgcacgcctt 247
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 618 tatgttaatcttacagtcaatagttcagtggtgtcgggtagtggtggtgcacgcctt 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 271
Length of database: 674
Length adjustment: 9
Effective length of query: 262
Effective length of database: 665
Effective search space: 174230
Effective search space used: 174230
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
