BAC Information

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BAC

Clone NameMSMg01-409C21
Chromosome13 (Build37)
Map Location 68,810,228 - 68,810,697
singlet/doubletsinglet
Overlap geneAdcy2
Upstream geneZfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik
Downstream geneLOC666205, LOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409C21.T7 (MSMg01no409_c21.b1)MSMg01-409C21.TJ (MSMg01no409_c21.g1)
ACCAG506726AG506727
length780767
length of high quality
(start - end)
501 (49 - 549)470 (76 - 545)
definitionCHROMAT_FILE: MSMg01no409_c21.b1 PHD_FILE: MSMg01no409_c21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:26 2005CHROMAT_FILE: MSMg01no409_c21.g1 PHD_FILE: MSMg01no409_c21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGAGTCATTCCGTTCTCTAAGGCCTCTGCAACATCATGACC
TACAGTGAGGATACTACTACTACTACTACTACTACTACTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTTCTTGTTGA
ACAATAATTTATTGAGATCCCTCCCTCCCAGCCTCTCCAATACCAAGGTC
ATTTTCTCTGCTTGTAGATCTTGTTTGCAAGTTCCATGAAGATGGATGGG
GGCAGGGACGCAGAGCACTGCTCTGTGAGACTCTTGAGGCGGTTGTAACT
GTCTTCCTCATACTTGAAGAAAACAGACTGCAGATCCAGTGCCTCATACA
TTGCTTTTCACCGAGCCACTTTTTCTGGGTCCTTCTGCCCATAATTCTCC
TCTAAGATCTGGCGCTGTTGAGGACAGGCTCGTAGCAGACACTGAACCAC
CAGNCAGCTGCCTTTGTTGCCCTGGATGTCAGTGGCGACCTTTCTCGTCA
CACTGGGGTCTCCAAGAGATCAAGGGCAACTTGTTCTGGGACTGGAAAAA
CTTGCCCTCTTCCTCAAGATCTTCAGGAGTTGGGATGTTCCTTTTCCCCT
CAATGGCGGCCAGGAAAGGGCCGCCTTGTACTTTGAAACCAATGGACCTC
CTTTTTGGGGTCAACCAAAACCATAGGCCC
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGTGGTTTTGCATTTAAAATACTA
AATATTTTGACAAACTATTTTGTTATTACTGCAACTTTTATAATTATTAA
AGTTTCTATTAGAAGAGTTATGTCCTGGCCAGTAGTACCTGGGACCTTCT
TTCTCAGACCTTCCCCATTTTCCTCATTCTTAGACTTCCTATAATACGGG
TTTAGAGGTATGTGGTCTTGCAAACACCCACAAGTAGTTCCCCTGATTCT
CCCATGGGTGACTCTGCTAAGGCAGAAACCGTGATACTTTCCAGATCTTC
TGGCCTTTTGACCTCCAGAGTCCCTCATGTGGTTTGTGTATAGGTTGGAC
AGGCCAATGTGGTTTATATATAGGTGGAACATGCCAATGTGGTTTATATA
TAGGTGGGACATGCCAGTGTAGGGCTCCTTGACAGAACCTGCTTTCCAAG
GACTCGTGATTGGGTCGAAAGACTAAATGAGCTGTTGACTGAGACCAGTG
ACTTTATATCGCTTAAGCTGATGTCACAGGCAAACACAAAGCACCATTGG
GTGAACTTTCTTACCGGGAGGAAAAACAAGTTTCGTGCATGAAGAAACCC
TGTCTGGTTTGCTGGGGAACAAAACTTTGCTTAAATTGCTTGGGAGTCCA
AAGGTTGTCCTCCTCCAGGGGTCCTGAAAAATGTAAAGAGAAAAGGGTTT
TTTTTAGGATTTATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_c21.g1 MSMg01no409_c21.g1 CHROMAT_FILE:
MSMg01no409_c21.g1 PHD_FILE: MSMg01no409_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:26 2005
         (470 letters)



>mm_chr13_68810028_68810897
          Length = 870

 Score =  909 bits (470), Expect = 0.0
 Identities = 470/470 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtggttttgcatttaaaatactaaatattttgacaaactattttgttattactgcaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtggttttgcatttaaaatactaaatattttgacaaactattttgttattactgcaac 260

                                                                       
Query: 61  ttttataattattaaagtttctattagaagagttatgtcctggccagtagtacctgggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttataattattaaagtttctattagaagagttatgtcctggccagtagtacctgggac 320

                                                                       
Query: 121 cttctttctcagaccttccccattttcctcattcttagacttcctataatacgggtttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttctttctcagaccttccccattttcctcattcttagacttcctataatacgggtttag 380

                                                                       
Query: 181 aggtatgtggtcttgcaaacacccacaagtagttcccctgattctcccatgggtgactct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtatgtggtcttgcaaacacccacaagtagttcccctgattctcccatgggtgactct 440

                                                                       
Query: 241 gctaaggcagaaaccgtgatactttccagatcttctggccttttgacctccagagtccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctaaggcagaaaccgtgatactttccagatcttctggccttttgacctccagagtccct 500

                                                                       
Query: 301 catgtggtttgtgtataggttggacaggccaatgtggtttatatataggtggaacatgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgtggtttgtgtataggttggacaggccaatgtggtttatatataggtggaacatgcc 560

                                                                       
Query: 361 aatgtggtttatatataggtgggacatgccagtgtagggctccttgacagaacctgcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgtggtttatatataggtgggacatgccagtgtagggctccttgacagaacctgcttt 620

                                                             
Query: 421 ccaaggactcgtgattgggtcgaaagactaaatgagctgttgactgagac 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaaggactcgtgattgggtcgaaagactaaatgagctgttgactgagac 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)