NNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCANAAATCC
GCGGAATTCAAGCTCTAATCTCTAAGCTCTAGGCTAATTGCATCTGTCTT
GTCCAGATCGCTTTCTATCCCTCCAAGTTATCCATGTACCCACCAATGAG
GAAGCACGTTGTTGGACCCTTGCTCCCTGGGCTTCCTCTCTGCAGCATAC
ATCTGTCCACAGGCCTTCTCTCCTGGTAATCTACCTTGGCTGGTTCATTC
ATCAAATTTTCAGATTGAGAAGATGTCTTGTTCCCTTAGCCACCATGACT
AGATTCACCTTCGTAGCAGATCCTTGGCTTTGCCCTGTTTGATTGAGGCT
CAGCTTCCTAGTTCTGAGACGGTTAGAGACTTTCTTAATCTAAGTTTCTA
TGCTTTTGAAATACTTAGTGAAAAGGTGAATAATAATCACTAGCTTGGCC
AACAGGACAAGCCCAGAACTCTAACCAGATGTTCAGCCTCCCTAAGCTTC
ACTTGCTTCGAAGTGAATATTCCTGCTCATTTCTGAAGCAAGTGTGTCAA
AATTCAAGCAAGAGAGCAGATAGCATGCATTANACTCTTCTTAGTTAAAT
GGGGGAGGGGAGAATCAAATTTTAGTTATTCCTTTTCTAACTGCTTGAAG
CAAAACTTTTACACCCTTTCCCTAATCTTGGATAAATTCTGAAGTGAAAA
ACCTTTCCTAAAACAACAATTCCTCCCCCCCACAATTAAAGTTGGCCCAA
TTAAA

NNCCACAAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAGCTCCTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGCGTGCGNCCGTGCGTGCGTGCGCGTGT
GCGACATATGTGCCTAGCATATTAAGTCAGCGCGGGTGGGTCGTCCTCTA
TCGTCTTCTATCGCTTTTCATCCGCTCTGCTCTTCCCCCTTCCTCTTCGC
GCGCTTCACTTCATTTTCCCGTTTCCCGTTTCCCTTTTCTTCTTTTTCCT
TCCCTCCTCCCCTCTTCCCTCCTCCCCTCCTTCTTTTTTTTTCTCCTTTC
CCCTGCTTTCTCCCTCCTTTCTCCTTTTTCTCTTTCCTCTTCCTTCTCCT
CTACCTCTTCCCTTCTCTTTCCTTTCCTTCTTTTTTCTCTCTCCCTCCTC
CCTTTTCCCCTTTTCTCCTTCCATTTTTTCCTTTCCCTTTTCTCCGCCTT
TTCCTCCTTTTCCCCCCCTTCCTCCTTCTTTCTCTTCCTTCTCTTCCCCT
TCCCTTTTTCCTCCTTTCCTTTTTCCCCCCCTTCCTCTCCCCCCTCCTTT
CCCTTCTCTCTCTTTCCCTCCCCTCCCTTTTCCCCTCCCCTCCCCCCCTC
CTTTTCCCCTCCTTTCTTTTTTTCTTCTCCTCTACTCCCCCTCTCTTTTC
CTTATCCTTGTTTCGCTCTCCTTTTCCCGCCTCTTCCCCCTTTTTCCCTT
CTCTCCCCTATTCCGTTCCTTATCCCCCTCTCCTTATCTCCCCCCCTTTC
TCCCCCTTTTTTTCACCTTTCTCTCCCTTTTCTTCCCTTCCCTGTGCTCC
CN

Query= MSMg01no410_b23.b1 MSMg01no410_b23.b1 CHROMAT_FILE:
MSMg01no410_b23.b1 PHD_FILE: MSMg01no410_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:46 2005
         (545 letters)



>mm_chr13_112908874_112909822
          Length = 949

 Score =  944 bits (488), Expect = 0.0
 Identities = 529/545 (97%), Gaps = 4/545 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcaagctctaatctctaagctctaggctaattgcatctgtcttgtccagatcgct 64
           |||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 205 ggaattcaagctctaagctctaagctctaggctaatcccatctgtcttgtccagatcgct 264

                                                                       
Query: 65  ttctatccctccaagttatccatgtacccaccaatgaggaagcacgttgttggacccttg 124
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttctatccctccaagttagccatgtacccaccaatgaggaagcacgttgttggacccttg 324

                                                                       
Query: 125 ctccctgggcttcctctctgcagcatacatctgtccacaggccttctctcctggtaatct 184
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 325 ctccctgggcttcctctctgcagcatacgtctgtccacaggccttctctcctggtaatct 384

                                                                       
Query: 185 accttggctggttcattcatcaaattttcagattgagaagatgtcttgttcccttagcca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 accttggctggttcattcatcaaattttcagattgagaagatgtcttgttcccttagcca 444

                                                                       
Query: 245 ccatgactagattcaccttcgtagcagatccttggctttgccctgtttgattgaggctca 304
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccgtgactagattcaccttcgtagcagatccttggctttgccctgtttgattgaggctca 504

                                                                       
Query: 305 gcttcctagttctgagacggttagagactttcttaatct----aagtttctatgcttttg 360
           |||||||||||||||||| ||||||||||||||||||||    |||||||||||||||||
Sbjct: 505 gcttcctagttctgagacagttagagactttcttaatctttctaagtttctatgcttttg 564

                                                                       
Query: 361 aaatacttagtgaaaaggtgaataataatcactagcttggccaacaggacaagcccagaa 420
           ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaatacttagtgaaaagatggataataatcactagcttggccaacaggacaagcccagaa 624

                                                                       
Query: 421 ctctaaccagatgttcagcctccctaagcttcacttgcttcgaagtgaatattcctgctc 480
           |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 625 ctctaaccagatgttcagtctccctaagcttcacttgctttgaagtgaatattcctgctc 684

                                                                       
Query: 481 atttctgaagcaagtgtgtcaaaattcaagcaagagagcagatagcatgcattanactct 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 685 atttctgaagcaagtgtgtcaaaattcaagcaagagagcagatagcatgcattaaactct 744

                
Query: 541 tctta 545
           |||||
Sbjct: 745 tctta 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 949
Length adjustment: 10
Effective length of query: 535
Effective length of database: 939
Effective search space:   502365
Effective search space used:   502365
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)