BAC Information

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BAC

Clone NameMSMg01-410L09
Chromosome13 (Build37)
Map Location 96,074,102 - 96,074,422
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435378, ENSMUSG00000042857, Ap3b1, Tbca, Otp, Wdr41, Pde8b
Downstream geneZbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2, Sv2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410L09.T7 (MSMg01no410_l09.b1)MSMg01-410L09.TJ (MSMg01no410_l09.g1)
ACCAG507896AG507897
length811772
length of high quality
(start - end)
169 (75 - 243)321 (80 - 400)
definitionCHROMAT_FILE: MSMg01no410_l09.b1 PHD_FILE: MSMg01no410_l09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:31 2005CHROMAT_FILE: MSMg01no410_l09.g1 PHD_FILE: MSMg01no410_l09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTATAATTGCGGCCGCTATACGACTCCTAATGCGCAGTATCCGCGG
AATTCCATTGTTCGCTGTCAGAGTGTGTTACAGTTTATCTGGTCATCTAC
TGATTGATGTCTTGGCTGTGCCCAAGTGTTCATATTTACAAATAAAGCCA
CTGGAAAATACACATGTTGCTGTGTAGATGTTTGTTCCTTTATTAAAAAT
TTTAGTTACATTTATTGAGTGTGTGTGTGTGTGTGTGTGCGCGCGTTTTT
TTTTANCCTAGNCCTTCCCTTTTTTTTATTTCCTTTTTCCTCTCCCCTCC
CCCAAAACCACCCATTTTTCCTCGCTTTACCAAACTATACTCCCCCCCTT
TACTTATTTTTTTTTTTTTCCCCCCTCCTCCCCCTCCTTTTCATATCTTT
TTCATCCTTCCTCCTCCACCTTCCCTTCTACTCACATTTCACCCCATATC
ATCTCTTCCCTCCTCCCACTATCTAACTTTCCCTCATACCTTTCCCCCTC
TCTACCCCTCCTCCCTCCCATCCCTTTTCTTTTTTTTTCCTCTCTCTTAT
ACTCTTCTTCTTTTCTCTCCTTTACTTTTTCCCCTTTCTTTCCCCTCTCC
TCTCTTCTCTTTTCTCCTCTTCCTTCCCTTCTCTCTTCTTCTCTTCCCTC
TTCCTATATCTTCATTCTTTTTTCTCACTCCTCCTTATCTCCTTATTTTT
TCCCCTCTCCCTCCCCACTTCCTTTCCTTCCCCCTTTTCTTTCCATTCCT
TCCCTCTCCCTATTTTTTTCTTCCCCCCCCTCTTCTTCCTCTTTATACCT
TCTCTTTTTTT
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTTGCTTATAAAGAAAATA
AAATCATAAAATTTGAAAGAAGATGGGTTGAACTGGAAAATGTCACTAAG
TGACTAAGTGAGGTAGCCCAGGCCCAGAAAGATGTTTAAACACCACATGT
CCTTCCACACAGGCAGCCTTGAGCATTGACATTTTAGAGTATTGTGTTTA
GTTTTGAGTTCTGGTAAGGCCAGAAAAGATGAGAAGGGCCATTTGGAGGA
GTGGGGCATGAAAATAAACCTTATTTTTTGGGGGATTTGTAGAAGACATT
TGGCAGGAGAGTAGAGAAGGACAGGGCTGGGAGGCAGGAGGCTCTGAGCA
CGGAGGGCTGGTGATGCATGTCACACCAGCTATACGATGGCCAGTTAAGT
TTTGCTTTGCATTCTTCCCATTTTAAACTCTACCCCCTTCCTGTCCTTTT
CTCTTCTCTCCCCTCCTTTTCCCATTTCTTTTTCTGCCTTCCTTTCCCCT
CTTTTCCTCTTCTTCTTCTTCCCCCCTTTTCCCTTCTCCCCCCTTTCTTC
CCCCCCTTTCCTTTTTTCTTCATCTCTCCCCTCTCTTTCCTTTCCTCTCC
CCTTTCCTTTCCCTCTTTTCCCCCTTACCCCCCTCTCTCCTTATCCTTCC
TTTCCCTCTTTCTTTTCCCCCCCTTTCTCTTTCTTTTTCCCTTACTTCCC
TTTTTCCCCTCCCCATTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_l09.g1 MSMg01no410_l09.g1 CHROMAT_FILE:
MSMg01no410_l09.g1 PHD_FILE: MSMg01no410_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:32 2005
         (321 letters)



>mm_chr13_96073902_96074622
          Length = 721

 Score =  553 bits (286), Expect = e-162
 Identities = 312/326 (95%), Gaps = 10/326 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatttgcttataaagaaaataaaatcataaaatttgaaagaagatgggttgaactggaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatttgcttataaagaaaataaaatcataaaatttgaaagaagatgggttgaactggaaa 260

                                                                       
Query: 61  atgtcactaagtgactaagtgaggtagcccaggcccagaaagatgtttaaacaccacatg 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggcactaagtgactaagtgaggtagcccaggcccagaaagatgtttaaacaccacatg 320

                                                                       
Query: 121 tccttccacacaggcagccttgagcattgacattttagagtattgtgtttagttttgagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccttccacacaggcagccttgagcattgacattttagagtattgtgtttagttttgagt 380

                                                                       
Query: 181 tctggtaaggccagaaaagatgagaagggccatttggaggagtggggcatgaaaataaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 tctggtaaggccagaaaagatgagaagggccatttggaggagtggggcatgaaaagaaac 440

                                                                       
Query: 241 ctta-----ttttttgggggatttgtagaagacatttggcaggagagtagagaaggacag 295
           ||||     |     |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttaagggat-----gggggatttgtagaagacatttggcaggagagtagagaaggacag 495

                                     
Query: 296 ggctgggaggcaggaggctctgagca 321
            ||||||||| |||||||||||||||
Sbjct: 496 agctgggaggtaggaggctctgagca 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)