BAC Information

Click to search

BAC

Clone NameMSMg01-411C20
Chromosome13 (Build37)
Map Location 67,962,882 - 67,963,148
singlet/doubletsinglet
Overlap genenone
Upstream geneEG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273
Downstream geneBC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik, Adcy2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411C20.T7 (MSMg01no411_c20.b1)MSMg01-411C20.TJ (MSMg01no411_c20.g1)
ACCAG508251AG508252
length802761
length of high quality
(start - end)
270 (43 - 312)432 (77 - 508)
definitionCHROMAT_FILE: MSMg01no411_c20.b1 PHD_FILE: MSMg01no411_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:08 2005CHROMAT_FILE: MSMg01no411_c20.g1 PHD_FILE: MSMg01no411_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGTGCTATACTGAACATATTAAACATTAATAAGTGCTTAAATTGCTAT
TAACTCTTTGTTTTTAAATGTAAAAGTTAGAAAGGAAAAGGGGCCCAGAA
TGGGGAAGAGATTTGTTATTTCTGTCTGTCCTCTTCCTCCTCCTCCTCCT
CTCCCTCCTCCTCCTCTTCCTCTTCTTCCTCCTCTTCCTCCTCCTCTCCT
CCTCCTCCTCTTTGTTTTTGGTTTGTTTGTTTTGTTCTGTTTTGTTTCTG
TTGACATAGGTTTTCTCTGTAGCCCCAGCTGTCCTAAAACTGGTTCTGTA
GACCCGGCTGGCCTTGAACTCTCAGAGATCCATCCATCTGCCTCTGCTTC
CCAAGTACTGTGATTAGTTGAATGGGCTGCCCTCGTCAGCAAGATTGCTC
TTTTTTGCTAACTAGTGTCCTCATTCATTGCTGACATCTGATATTTTTTA
CCATCTTCACTCATTTTCCATGTTTGTTTTTTCCTTGCTAGCTTCTTTTG
TTTTGCCCTTGTACCCTTTCTCTTACCTCCTCTGGTAATCTCCTGCCTTC
CCCTCTCTTCATTTCGGTTCCCTTCTTTTTCTTTTTTTTTCCTTTTTTCC
TCCTTTTCCTTCTTTTTTCCTCTATCTCTTTCATTTCCCCTCTTTTTACA
TGGCGTCAACGTTTTTCTTACCGTTGTCCTCTTCTTATTCCCCTTTTTTT
CATCACTTTTTTTCCTCCCCTCCATATTTTACTTTTCTTCTTCTCTCTGC
CG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAGCCTGGTCTACAGAGTG
AGTTCCAGAACAGCCATGGCTGCACAGATAAACCCTGTCTGGAAAAACAA
AACAAAACTAAACAAAACAAATCAAATATTGCTTTTGAGGCTCCATTCTA
ACAGCCATTTATCAGCTTTGATTGTGCTGTGGTATGCTTCCCTTTTGCTC
TTTCAAACCTAAGCTTTTAGGCCCTAGATTCTGCCAACTGTGGGATAAAG
ATAAGAACTGTGGGACCCACAAACTTGCATTCCTCAGTCGTGAGCAGCAT
TTTCATGTTTTCCAATCATAGGAAATTTAAGGTAGGAGATGCAAACACCT
GGTTTTAACTTTTAAAAAATGCTTATTAGATTGTACTTAGTGTGCATATA
TCTCTCTGACTCAGTGTGTGTGTCTGTGTCTGTCTGTCCTTTGCTTTTTC
ATCTGTGGACACATGAATAAATGCCCCAACCAGAGAACAACTTATGAAAT
ATTTAATTAAAAAAAAAGACTAAAAGAGTGTCCTTATTGAAGGAGGTCTC
AAGATCTCACAGCTTAGCCCGGTTTCCTCTGCTTCTCTGTTCTCATACAA
CACCGTACTTTCCTTGTCTACCTGTCTTCACCCTGAACCCTTTCCTTAAT
GCCTGTCCCCGTATACTCCCTAACCTATGATTTGCCACTTTTCCACACCT
CCTCCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_c20.b1 MSMg01no411_c20.b1 CHROMAT_FILE:
MSMg01no411_c20.b1 PHD_FILE: MSMg01no411_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:08 2005
         (270 letters)



>mm_chr13_67962679_67963348
          Length = 670

 Score =  493 bits (255), Expect = e-144
 Identities = 264/267 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtgctatactgaacatattaaacattaataagtgcttaaattgctattaact 63
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtgccatagtgaacatattaaacattaataagtgcttaaattgctattaact 263

                                                                       
Query: 64  ctttgtttttaaatgtaaaagttagaaaggaaaaggggcccagaatggggaagagatttg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctttgtttttaaatgtaaaagttagaaaggaaaaggggcccagaatggggaagagatttg 323

                                                                       
Query: 124 ttatttctgtctgtcctcttcctcctcctcctcctctccctcctcctcctcttcctcttc 183
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 324 ttatttctgtctgtcctcttcctcttcctcctcctctccctcctcctcctcttcctcttc 383

                                                                       
Query: 184 ttcctcctcttcctcctcctctcctcctcctcctctttgtttttggtttgtttgttttgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttcctcctcttcctcctcctctcctcctcctcctctttgtttttggtttgtttgttttgt 443

                                      
Query: 244 tctgttttgtttctgttgacataggtt 270
           |||||||||||||||||||||||||||
Sbjct: 444 tctgttttgtttctgttgacataggtt 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)