Query= MSMg01no411_f12.b1 MSMg01no411_f12.b1 CHROMAT_FILE:
MSMg01no411_f12.b1 PHD_FILE: MSMg01no411_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:21 2005
(574 letters)
>mm_chr13_111728913_111729888
Length = 976
Score = 1007 bits (521), Expect = 0.0
Identities = 559/573 (97%), Gaps = 4/573 (0%)
Strand = Plus / Minus
Query: 5 gaattctttgtttcctttcgctcataagtttatgtcagtcttctagatttcttcttgaga 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 gaattctttgtttagtttcgctcataagtttatgtcagtcttctagatttcttcttgaga 717
Query: 65 cctcagatattaattatattttatccttttatctatctaccttcttattttcccctgctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 cctcagatattaattatattttatccttttatctatctaccttcttattttcccctgctt 657
Query: 125 ttaaaacaaaaacatgatttttgtcttatttttctcacatcaactccttacaacattttt 184
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ttaaaacaaaaacatggtttttgtcttatttttctcacatcaactccttacaacattttt 597
Query: 185 ggtgtgtgtgtgatacgtatgtgtatgtgtatagtttacatgggtcctggggatttgaac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ggtgtgtgtgtgatacgtatgtgtatgtgtatagtttacatgggtcctggggatttgaac 537
Query: 245 tttcacaggatgcactctcacccaatgattatatatccccagcccttaagatttgtgctt 304
|||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||
Sbjct: 536 tttcacaggatgcactctcacccaatga-gacatatctccagcccttaagatttgtgctt 478
Query: 305 ttaattttactcagtttttattgagttttgttgacttttgaattatatttatttcacttt 364
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 477 ttaattttactcagtttttattgatttttgttgacttttgaattatatttatttcacttt 418
Query: 365 gctcagctcttcagtgcatgctttattcccttgatggcaacagttctctgaatggacagc 424
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gctcagctcttcagttcatgctttattcccttgatggcaacagttctctgaatggacagc 358
Query: 425 tctgctctgtcttctttcttatgggaataatttgtccattcaggggattcatggtagaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tctgctctgtcttctttcttatgggaataatttgtccattcaggggattcatggtagaaa 298
Query: 485 a---tgttgtcatctttatcctttccggtggctttttcccatgtttcctgtggaaatttt 541
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 297 atattgttgtcatctttatcctttccggtggcttttccccatgtttcctgtggaaatttt 238
Query: 542 atgaatgtactgtggtggcctttttttcttcca 574
||||||||||||||||||||||||||| |||||
Sbjct: 237 atgaatgtactgtggtggcctttttttattcca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 976
Length adjustment: 10
Effective length of query: 564
Effective length of database: 966
Effective search space: 544824
Effective search space used: 544824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_f12.g1 MSMg01no411_f12.g1 CHROMAT_FILE:
MSMg01no411_f12.g1 PHD_FILE: MSMg01no411_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:21 2005
(530 letters)
>mm_chr13_111568735_111569663
Length = 929
Score = 917 bits (474), Expect = 0.0
Identities = 516/532 (96%), Gaps = 6/532 (1%)
Strand = Plus / Plus
Query: 1 caaggtcatatgttcccacgtcactcttcatgcacacttttttatattaaacacattgat 60
||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 caaggtcatctgttcccatgtcactcttcacgcacacttttttatattaaacacattgat 260
Query: 61 taatcccgaccctcccatttccccatcactctacctctgctgctttaccctctctgctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatcccgaccctcccatttccccatcactctacctctgctgctttaccctctctgctcc 320
Query: 121 agtattgctcgtcgctccttttattttcattaaactctacctcctgtctctataaatgcc 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 agtattgctcgtcgctccttttattttcattaaactctacctcccgtctctataaatgcc 380
Query: 181 tcatgccatggctgcatctatttccctgcctttcatgtgtaggctatgcacacaatatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 tcatgccatggctgcatctatttccctgcctttcatgtgtaggctatgcacacaatacaa 440
Query: 241 attta--tttgaaactaggacccatacgtgtgagaaaacatgaattgtttgtcttttagt 298
| | |||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 441 a---agatttgaaactaggacccatacatgtgagaaaatatgaattgtttgtcttttagt 497
Query: 299 gcctgagtgacctcccttggtctcatccattacctccaaatgtcatgattccacccgtct 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gcctgagtgacctcccttggtctcatccattacctccaaatgtcatgattccacccgtct 557
Query: 359 ttcaagttgagtaatattccttcatgcatattttcattatctgctcatcagttggtggat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttcaagttgagtaatattccttcatgcatattttcattatctgctcatcagttggtggat 617
Query: 419 gttttggttgctttaattgcctagctttgtgaatcagcaaaatacaatttttaatgtctt 478
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 618 gttttggttgctttagttgcctagctttgtgaatcagcaaa-tacaatttttaatgtctt 676
Query: 479 actttagttggtgattaagaataataaacacaaagtgatttttatataccaa 530
||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 677 actttagttggtggttaagaataataaacacaaagtgatttttatataccaa 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 929
Length adjustment: 10
Effective length of query: 520
Effective length of database: 919
Effective search space: 477880
Effective search space used: 477880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
