BAC Information

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BAC

Clone NameMSMg01-412C03
Chromosome13 (Build37)
Map Location 109,715,751 - 109,916,588
singlet/doubletdoublet
Overlap genePde4d, LOC100040968
Upstream gene3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b, EG668144, LOC621663
Downstream geneLOC100040577, Rab3c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412C03.T7 (MSMg01no412_c03.b1)MSMg01-412C03.TJ (MSMg01no412_c03.g1)
ACCAG508979AG508980
length784751
length of high quality
(start - end)		423 (47 - 469)373 (80 - 452)
definitionCHROMAT_FILE: MSMg01no412_c03.b1 PHD_FILE: MSMg01no412_c03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:24 2005CHROMAT_FILE: MSMg01no412_c03.g1 PHD_FILE: MSMg01no412_c03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,715,751 - 109,716,170)(109,916,216 - 109,916,588)
sequence
GTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCGTAGATTTCCCATGGAGAAGGTTCTGTATGACCACAGACCCATT
GCAGTGAAGTACTGGCCAGGGCAAAGCATAGACAGAGTAGACTTAGGGAT
GAATGGTGGCAGGCAGGAAGGGAAGAGTGTGAACTTTGGTACTCTTTCTG
AGGATTTTTTTCCTCCCAAGTATTTATACAAAGAAATTACATGGGTGGTT
ATTGTCCTTAAGTGGGAAATGACATAGAAGGTTGTTGTATAGATGTGAAG
GTCGAGCTCAGAATAATTCTTGAGTGGGGACAGTAATAGCAGCCATTGTT
GAGAAGGTGCAGGTTGAGGATGGGGAGGCGCAGGGAGAGTTTTGTAAATG
TGAAGGAATCTCAGGGAGATCGTTTTCTTTCTTTTTTTTACATTTATAAT
ATTCTTTTCTCCTTTTTTCCTTTTGTTCAATTAGGCACTTTCCTCATTTA
CATTTCCTATGCTGTCCCTAAAGTTTCCCATATTCCTCTATTCCCCCATC
TACTTACCCCTATCTTTTTGGTTTTGGTGTTTTTTTGCCATTGTTTCCCT
TTTGCTTTCTTTTACCTGCTCTTTTTTCTTCTTTCCCCCCCTTTTCCCCT
CTCCCTTCCTCTTTTTTCTCTACCTCATAGTTACTCTCTTTTCTTTTCCT
TTTTTTTCCTTTTCTCCTACCTATTTCTTTATCCCCATCTTTGTTGTATA
TTTTACCCCCATTATATTTCCGTTCCTCTCCTTN

CCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTGTTCAGCAAAAATGTA
TTCCTAAATCAACGCATTTGTTAACTTACTGCACACATGCATCGTAAACT
GATGTTTTCTTCCTTGAATTCACTGTTAGAAAGCACACAGTCAAATCTCT
GAATTTTCCTTGGCAATTACTCAATAATCAATGGCGTGGTGAGTTTGCTT
TCATGTTGCACACGATCTTCATGATGTTATTTTCTGTTTTAGGATATATA
TTTTTTTATTTTTGTATCTTGTTCTAAATTATTTGACAATGCAACAATTT
TCAGTTTTAGGAGTGAGGGAGAAAGAGGGATGTAAACAAAATATATTGAC
TGAAATAGGTAGAAAATGCAAAGGGAAAGAAAAGATCATTTATGTATATT
GGAAAAGCAGTGTGCTGATTTTTAAAAGACACATACAACCTAAGTAAAGA
ATAGAACATAAAGTATAAATGCTAGACTTGCTGACTACCTCTTCTTTAAT
ATATCTGACACCATCGGTGGAGGCTTGTTCCTAAATATGCCATACAACCG
TTATATTTATACCTTATCTTGTCCCCATATTTTTGTTTTCCCATTCTGCT
CAATTCCCCTCCTTACTTGCCATTTATCCCGCGCCCACTCCTTATAATCC
TCCTTTCTTATTCTCACAATTCTCTTCTCCATTTCCGATAATATAATTTC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_c03.b1 MSMg01no412_c03.b1 CHROMAT_FILE:
MSMg01no412_c03.b1 PHD_FILE: MSMg01no412_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:24 2005
         (423 letters)



>mm_chr13_109715548_109716370
          Length = 823

 Score =  696 bits (360), Expect = 0.0
 Identities = 405/420 (96%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcgtagatttcccatggagaaggttctgtatgaccacagacccattgcagtgaag 63
           ||||||| | |||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatggatttggcatggagaaggttctgtatgaccacagacccattgcagtgaag 263

                                                                       
Query: 64  tactggccagggcaaagcatagacagagtagacttagggatgaatggtggcaggcaggaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tactggccagggcaaagcatagacagagtagacttagggatgaatggtggcaggcaggaa 323

                                                                       
Query: 124 gggaagagtgtgaactttggtactctttctgaggatttttttcctcccaagtatttatac 183
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 324 gggaagagtgtgaactttgatactctttctgaggatttttttcctcccaagtatgtatac 383

                                                                       
Query: 184 aaagaaattacatgggtggttattgtccttaagtgggaaatgacatagaaggttgttgta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaagaaattacatgggtggttattgtccttaagtgggaaatgacatagaaggttgttgta 443

                                                                       
Query: 244 tagatgtgaaggtcgagctcagaataattcttgagtggggacagtaatagcagccattgt 303
           |||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 444 tagatgtgaaggtccagctcagaataattcaggagtggggacagtaatagcagccattgt 503

                                                                       
Query: 304 tgagaaggtgcaggttgaggatggggaggcgcagggagagttttgtaaatgtgaaggaat 363
           |||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 504 tgagaaggtgcaagttgaggatggggaggcacagggggagttttgtaaatgtgaaggaat 563

                                                                       
Query: 364 ctcagggagatcgttttctttcttttttttacatttataatattcttttctccttttttc 423
           |||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 564 ctcagggagatcattttctttcttttttttatatttataatattcttttctcattttttc 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no412_c03.g1 MSMg01no412_c03.g1 CHROMAT_FILE:
MSMg01no412_c03.g1 PHD_FILE: MSMg01no412_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:24 2005
         (373 letters)



>mm_chr13_109916016_109916788
          Length = 773

 Score =  706 bits (365), Expect = 0.0
 Identities = 371/373 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagtgttcagcaaaaatgtattcctaaatcaacgcatttgttaacttactgcacacatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tcagtgttcagcaaaaatgtattcctaaatcaacgcatttgttaacttactgcacacatg 514

                                                                       
Query: 61  catcgtaaactgatgttttcttccttgaattcactgttagaaagcacacagtcaaatctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 513 catcgtaaactgatgttttcttccttgaattcactgttagaaagcacacagccaaatctc 454

                                                                       
Query: 121 tgaattttccttggcaattactcaataatcaatggcgtggtgagtttgctttcatgttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tgaattttccttggcaattactcaataatcaatggcgtggtgagtttgctttcatgttgc 394

                                                                       
Query: 181 acacgatcttcatgatgttattttctgttttaggatatatatttttttatttttgtatct 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 acacgatctttatgatgttattttctgttttaggatatatatttttttatttttgtatct 334

                                                                       
Query: 241 tgttctaaattatttgacaatgcaacaattttcagttttaggagtgagggagaaagaggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tgttctaaattatttgacaatgcaacaattttcagttttaggagtgagggagaaagaggg 274

                                                                       
Query: 301 atgtaaacaaaatatattgactgaaataggtagaaaatgcaaagggaaagaaaagatcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 atgtaaacaaaatatattgactgaaataggtagaaaatgcaaagggaaagaaaagatcat 214

                        
Query: 361 ttatgtatattgg 373
           |||||||||||||
Sbjct: 213 ttatgtatattgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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