Query= MSMg01no412_g18.b1 MSMg01no412_g18.b1 CHROMAT_FILE:
MSMg01no412_g18.b1 PHD_FILE: MSMg01no412_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:46 2005
(526 letters)
>mm_chr13_115185853_115186778
Length = 926
Score = 975 bits (504), Expect = 0.0
Identities = 516/522 (98%), Gaps = 4/522 (0%)
Strand = Plus / Plus
Query: 5 gaattccagaacaagtcagtataaatttactaagtaggatattttaatatatatctaaat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagaacaagtcagtataaatttactaagtaggatattttaatatatatctaaat 264
Query: 65 gatgtgtgaataaaaagaggggtgctggggtaaggacagtaaccacatagttaagtgtct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatgtgtgaataaaaagaggggtgctggggtaaggacagtaaccacatagttaagtgtct 324
Query: 125 ttaagatatacatatattaatatatatacaactttgatggtgtctggagttatttctgag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaagatatacatatattaatatatatacaactttgatggtgtctggagttatttctgag 384
Query: 185 agaaatttaaggaaaaatttccttttctttctcagtaaacaggatcaaaggctagttctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agaaatttaaggaaaaatttccttttctttctcagtaaacaggatcaaaggctagttctt 444
Query: 245 gagatgccttaaataggataataggattacagctcataagaataccaataaacaaacaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagatgccttaaataggataataggattacagctcataagaataccaataaacaaacaaa 504
Query: 305 caaacaaacaaacaaacaaaaagtgtatttacaggctggagagatggatcagtgggtaag 364
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 505 caaacaaacaaacaaa----aagtgtatttacaggctggagagatggatcagtaggtaag 560
Query: 365 agcactgactgctcttctgaaggtcctgagttcaaatcccagcaaccacatggtggctca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcactgactgctcttctgaaggtcctgagttcaaatcccagcaaccacatggtggctca 620
Query: 425 caaccatctgtaatgaaatctgacaccctcttctggcatgtctgaagacagctacagtgc 484
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 caaccatctgtaatgaaatctgacaccctcttctggcatatctgaagacagctacagtgc 680
Query: 485 acttatatataataataaataaatctttgggtcagagcaagc 526
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acttatatataataataaataaatctttgggtcagagcaagc 722
Score = 60.7 bits (31), Expect = 3e-13
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 294 aaacaaacaaacaaacaaacaaacaaacaaa 324
|||||||||||||||||||||||||||||||
Sbjct: 873 aaacaaacaaacaaacaaacaaacaaacaaa 903
Score = 56.8 bits (29), Expect = 4e-12
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 294 aaacaaacaaacaaacaaacaaacaaaca 322
|||||||||||||||||||||||||||||
Sbjct: 877 aaacaaacaaacaaacaaacaaacaaaca 905
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_g18.g1 MSMg01no412_g18.g1 CHROMAT_FILE:
MSMg01no412_g18.g1 PHD_FILE: MSMg01no412_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:46 2005
(406 letters)
>mm_chr13_115341931_115342736
Length = 806
Score = 708 bits (366), Expect = 0.0
Identities = 384/390 (98%)
Strand = Plus / Minus
Query: 17 ggcttggcaggtgctttatacacaaaggtacacaagacaatgtcaaactgctcccatcac 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ggcttggcaggtgctttatacacaaaggtacacaagacaatgtcaaactgctcccatcac 747
Query: 77 agtcttagagacacagttcatgtttaaaccatagctcagtcacagtgatacctggaaatc 136
|||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||
Sbjct: 746 agtcttagagacacagttcatgtttaaatcatagctcaatcacagggatacctggaaatt 687
Query: 137 gcctttaaaaagcaataatgaatggcaaatagaaataaaagcaataatgaacagcaaata 196
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gccttaaaaaagcaataatgaatggcaaatagaaataaaagcaataatgaacagcaaata 627
Query: 197 gaaataaaagcaataatgaatggcaaatagaaatcctgtagagcgcttattaggtttaac 256
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 626 gaaataaaagcaataatgaatggcaaatagaaatcctgtagagcacttattaggtttaac 567
Query: 257 accaagtgaatttatcacaattttttctataataagtatctataataaaagctgagttag 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 accaagtgaatttatcacaattttttctataataagtatctataataaaagctgagttag 507
Query: 317 aagtaactcaggatatcattttagaccatcaccgacagagacatagatatagaaagtgca 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aagtaactcaggatatcattttagaccatcaccgacagagacatagatatagaaagtgca 447
Query: 377 aaccttttatgggtacagtgtttcttgtga 406
||||||||||||||||||||||||||||||
Sbjct: 446 aaccttttatgggtacagtgtttcttgtga 417
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space: 316409
Effective search space used: 316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
