BAC Information

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BAC

Clone NameMSMg01-412L05
Chromosome13 (Build37)
Map Location 64,164,860 - 64,165,318
singlet/doubletsinglet
Overlap geneHsd17b3
Upstream gene2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575
Downstream geneSlc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412L05.T7 (MSMg01no412_l05.b1)MSMg01-412L05.TJ (MSMg01no412_l05.g1)
ACCAG509410AG509411
length739746
length of high quality
(start - end)		534 (53 - 586)361 (81 - 441)
definitionCHROMAT_FILE: MSMg01no412_l05.b1 PHD_FILE: MSMg01no412_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:09 2005CHROMAT_FILE: MSMg01no412_l05.g1 PHD_FILE: MSMg01no412_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCATCTTCTGCCAGAATGAGCACTCTGTTTCCCTAGTAA
CTGCCCCTCTTCGTCTCTCCAATAGTCCACATTTGGGTCACCTTATTACA
ACAACTGTTAGGGTCTGGTTTTCATCAACTGTTACTCATTAAGAGCAAAT
AGTTGATAGTTTAATTTTTCTAGAGTAGGAAGGGGGTAGCTTTGTATTCT
AATTTGCAGTTTCTTGCTACCCAACTCTGGGCATCTAACTGGGAAGATTA
AAGATAATTTCTCCCAGTAACTGAGAGGCTGAGGCAGGAGGATCACCACA
AATTCAAGATCAGTTTGGGTTCCATAGTAAGACTGCGGCTAGCCTTGGCC
ATATGCAACATAGATATGTTTCAAAAAATGAAATGAATAAAAAAAATTGA
ATTTCAAAAGATGTCAGCAAGAGCCCTGAAGAGCATAGGGGTGTCAGAGT
GAAGACATTGCATCTAGGATGGATTGCACTATGTGACACATGTCCCTGCT
GTGACAGGTTATCCCTGTGAGTGCAAAGGGACCCAAGTGGTTCCATTGAG
ACCAAGAATCCCTTCCTCCTTTCCTCTTGTCCGAGCCATTTGCCCTTATT
TCCTTTAACTTTTATTTTTTTCTTGGAAGCTTGGAAGGGAAACCATTGTC
CTGTTTGGAAACCATATCCTTTTTCCCCGCAGATTAAAG

NNNNNCCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCAGCAACCATGTTTTGTT
TTCATAGATTTTATAATGCTTCGAATTGGAGGCCTTGTAGGAACTGCCCG
CTTCAGTGTTAGCCAGTTCCCACAGACAGACAGTACATCGCCTAAGAGTG
TCTTAAGCAGACTAACCAGTCCAGAGCACACACTACATCACTGTGTGGTG
CGCACACTTCCCCTACCCTAACAAGCAGGTTCTCAACAACTAGGGACCAC
GGTGCAGCCCAGAGCTCTCCACATCATTAACTACTCATTTGGAAGCCTGC
TGAGCTGTGGTATCCATTCCTTCCCATGAAATCATAGTTATGTTTGTTTG
TTTTTTTTAAATCTAACTTGTGTGGGAGTGGGTGGGTAGGGNNATNNNNT
NNNNNNNNNTNNNNNTNNNNNTTTTNNTTTTTTTTNTTTTTTTTTTTTTT
TTTTTTTTTTTTTTNTTTTTTTNTTTTTNTTTTTTTTTTTTTNNTTTTTT
TTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTNNTTTNTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTNTNNNTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTNTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_l05.b1 MSMg01no412_l05.b1 CHROMAT_FILE:
MSMg01no412_l05.b1 PHD_FILE: MSMg01no412_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:09 2005
         (534 letters)



>mm_chr13_64164860_64165793
          Length = 934

 Score =  880 bits (455), Expect = 0.0
 Identities = 458/459 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatcttctgccagaatgagcactctgtttccctagtaactgcccctcttcgtct 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gaattccatcttctgtcagaatgagcactctgtttccctagtaactgcccctcttcgtct 400

                                                                       
Query: 65  ctccaatagtccacatttgggtcaccttattacaacaactgttagggtctggttttcatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ctccaatagtccacatttgggtcaccttattacaacaactgttagggtctggttttcatc 340

                                                                       
Query: 125 aactgttactcattaagagcaaatagttgatagtttaatttttctagagtaggaaggggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aactgttactcattaagagcaaatagttgatagtttaatttttctagagtaggaaggggg 280

                                                                       
Query: 185 tagctttgtattctaatttgcagtttcttgctacccaactctgggcatctaactgggaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tagctttgtattctaatttgcagtttcttgctacccaactctgggcatctaactgggaag 220

                                                                       
Query: 245 attaaagataatttctcccagtaactgagaggctgaggcaggaggatcaccacaaattca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 attaaagataatttctcccagtaactgagaggctgaggcaggaggatcaccacaaattca 160

                                                                       
Query: 305 agatcagtttgggttccatagtaagactgcggctagccttggccatatgcaacatagata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 agatcagtttgggttccatagtaagactgcggctagccttggccatatgcaacatagata 100

                                                                       
Query: 365 tgtttcaaaaaatgaaatgaataaaaaaaattgaatttcaaaagatgtcagcaagagccc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  tgtttcaaaaaatgaaatgaataaaaaaaattgaatttcaaaagatgtcagcaagagccc 40

                                                  
Query: 425 tgaagagcataggggtgtcagagtgaagacattgcatct 463
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 39  tgaagagcataggggtgtcagagtgaagacattgcatct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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