BAC Information

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BAC

Clone NameMSMg01-412P14
Chromosome13 (Build37)
Map Location 80,669,427 - 80,669,736
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666925, LOC382780, EG666933
Downstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412P14.T7 (MSMg01no412_p14.b1)MSMg01-412P14.TJ (MSMg01no412_p14.g1)
ACCAG509616AG509617
length716730
length of high quality
(start - end)
315 (324 - 638)503 (84 - 586)
definitionCHROMAT_FILE: MSMg01no412_p14.b1 PHD_FILE: MSMg01no412_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:31 2005CHROMAT_FILE: MSMg01no412_p14.g1 PHD_FILE: MSMg01no412_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCCTTCTATATTTGCGGCGCTATACGACTCCTATTTCCAGAGATCCG
CGGAATTCCATGTTTCGCAACTCCTGCTACTCCTCTTTGATAGCTATTGA
CCTTTTCTTCCTTCGAGTCAAATGTTTGACCTGGTTCAGTGCTGTCCATG
AGCAGCTGCAGCTCAACCTCCTTTGAAGCTAGATGTTATGAACTGAACAT
TCACACCATAAACTCTAGTGGGACTGCATGTGGAGGCAGGGTCTTTAAAG
AGACCATTACGGTTAAATGAGATCATGAATTATGCCCTAATCTAGAATGA
TGGTGTCCTTAGGAGTTTTTTAAATTTAGACACATACTCTTAGAGGAAAG
ATCAAGTAAAGGTACTCAGTAGGAAGATAGCCATCTATAAGCAAAGATCT
GAGGAAAACTAGCCTCACAGATGCCTTCATCTCAGCCTTCCAGGCTCCAG
AGTCATGAGGCTACAGGTATCTATATTTTAGCCACCCGGTACTTGCTGCC
TTGCTGGCAATTCCAGCAAGTTAAGACAATAGGCATGCCTTTGGGTTCCT
GGGCAGAAGATGAAGTGATCTGTGTAGCTTACAACTAATATTAAAGTACT
AAGTAGAACATCCAACATTGTCTCTTTCCCTTTACATAGGAGAGAACACA
GCTGTGGTGAAGGGTTAGCAGGTAATGTTGATACAATGACCAAATAAATA
GTGTGATGAACCGATA
GAAAAACCCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAAGAAACAGA
CTTGGAGGAGGAAGCAGCTCATTATGAGAGAAAAGGGTACCAGCCAGATA
AAATGCTAGCTAATCAGTTAAGGAAAAAGCCAAAAGCGGCTGGCAAAGGC
CAGCTTGCTGCTTGGCCTCTGGGCAGTCGGCTTCAAGGTCATAGTGCACT
TCCGCCCTATGCGGAGCCCCCGCCCTGCATAGTGCGTCAGCCCTGCGCAG
AGAGGCAATGGACAGAGAGGCAATGTTCATATTCGTTCATTCCAAAGGAG
GAACAAAGGAAAATACAACAGGCATTTCCGTTCATTCCAAAGGAGGAACA
AAGGAAAATACAACAGGCATTTACGGTCTTTGAAGGAGCCGAGGGTGGGC
GTGTCCATGCTCTGGTAGAATATGTGCAGATTAAAGAGCTTGCCGAGTCG
GTCCGTAAATATGGAACCAATGCTAATTTTACCTTGGTGCAGTTAGACAG
GCTTGCCGGCATGGCACTAACTCCTGCCGACTGGCCAATGATTGCAAAAG
CCGCTCTCCCTAGCATGGGCAAATATATGGAATGGACAGCTCTATGGCAA
AAGGCTGCTTTTTTTTATGCCCCCGCACACGCTGCTGGTTTGACTCTAGA
GCAGATAGATTGGATCCTTGAACTGCTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_p14.b1 MSMg01no412_p14.b1 CHROMAT_FILE:
MSMg01no412_p14.b1 PHD_FILE: MSMg01no412_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:31 2005
         (315 letters)



>mm_chr13_80669022_80669736
          Length = 715

 Score =  538 bits (278), Expect = e-157
 Identities = 302/310 (97%)
 Strand = Plus / Minus

                                                                       
Query: 6   gacacatactcttagaggaaagatcaagtaaaggtactcagtaggaagatagccatctat 65
           |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 715 gacatatacacttagaggaaagatcaagtaaaggtactcagtaggaacatagccatctat 656

                                                                       
Query: 66  aagcaaagatctgaggaaaactagcctcacagatgccttcatctcagccttccaggctcc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 aagcaaagatctgaggaaaactagcctcacagatgccttcatctcagccttccaggctcc 596

                                                                       
Query: 126 agagtcatgaggctacaggtatctatattttagccacccggtacttgctgccttgctggc 185
           |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 595 agagtcatgaggctacaggtgtctatattttagccacccagtacttgctgccttgctggc 536

                                                                       
Query: 186 aattccagcaagttaagacaataggcatgcctttgggttcctgggcagaagatgaagtga 245
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 535 aattccagcaagttaacacaataggcatgcctttgggttcctgggcagaagatgaattga 476

                                                                       
Query: 246 tctgtgtagcttacaactaatattaaagtactaagtagaacatccaacattgtctctttc 305
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 475 tctgtgtagcttacaactaatattaaagtactaagtagaacatctaacattgtctctttc 416

                     
Query: 306 cctttacata 315
           ||||||||||
Sbjct: 415 cctttacata 406


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)