BAC Information

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BAC

Clone NameMSMg01-413E17
Chromosome13 (Build37)
Map Location 29,636,345 - 29,636,796
singlet/doubletsinglet
Overlap geneCdkal1
Upstream geneLOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneE2f3, Mboat1, Agtr1a, Uqcrfs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413E17.T7 (MSMg01no413_e17.b1)MSMg01-413E17.TJ (MSMg01no413_e17.g1)
ACCAG509862AG509863
length665766
length of high quality
(start - end)
75 (68 - 142)476 (61 - 536)
definitionCHROMAT_FILE: MSMg01no413_e17.b1 PHD_FILE: MSMg01no413_e17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:56 2005CHROMAT_FILE: MSMg01no413_e17.g1 PHD_FILE: MSMg01no413_e17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTTTTCCCCCCCTTTCCCCCCACTCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCCGAGGATCCGCGGAATTCCAGAGCAGTTGGCACTATTCA
GTGTGGCTTAATCTCAAAAACAGGGCCAAGAAAAAACAAACTCAATATCC
CCTAAAAATTCTTGAGTGAAATCACCCCCCAGAGTTCTCTGACTTAAGAA
GGTGGCGAAGGGGTGGCAGGGGAAATTTGGGCCTTTTACAGTTTAAGATA
GCGACGCTGGCCCCCAATGGCACTGGGGAAAATACCGGTGGTACACACTT
CACTTGGTTTTTTTAAACGGGTTTTCGTCCTCCACTATCTCCTTTCTCTT
TCCCCTCACTATTAACCCTATTGTGCCCCTCCCCGGCCGCTTTGTTTATT
TTTTTTTTTTTTTCCCCATTCAGAAATATGCTCCCCCCTCCTTTTCCCGT
TTTCCCTCTCATCTCCCCGTTCAATATATTTCCAACCCTTTTCCTTACCC
CTTTTCCCTATTCCCCCCCCCATTTCTTCTTTTAACCAATAAAAACCCCC
CCTCCCCCCTCTTCCCTGATTCCCCTCTTCCTATTTTCCTCATACCTTTC
TCCTCCCCTCCCACTTCCCTTTTCCCGCCTTCCTCATACTCATCTATTCT
TCATTTTCCCCCCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXAGGGCAGGAACTGAAAACAGAAACTGAGCAGGAGAGCTGC
TTGTTGACTTGCTCGGACTGTTTTTTTAATACCCAGGACTCTGCCTAGGG
GATGATACCACCCACAGTGGAGACAAATCTGCTGGAGGCATTTCATCTAA
TGAGAGTCTCTCTTCCCCAGTGACTGTTTTGTATCAAGTTGTAAAACTGA
TCTGTACAAGAGAGAATTTGATTAGTTTTATAGAATATAGTATATATATT
AGAATATATTATTTTGATCTTTAAATTACCAGTAGAAGTTTGCTGCCTGT
AAAGGGGAAATGGTTTGGATGAATGTGGCTCTTAGCAGTTGGCAACAAAG
AAATAATCTTGCTGAAAGTGTTAGTACACACTAGAGGCTAAGGCAGGAGA
ATTACCATCAGTTTAAGGCCAGTTGGGGCTGTATAAAGGGATTTANAGAA
GAAAATATAAATAAAGAAGAAAAAATAAATTTTCATTGTTTATGTGTTAA
GATATGTCAGAAACAAGCTTTATACCCATGACTGTCCTACAGTGTCATGG
TGGAACTCTGCCTATGTCCTGGCCATTTTCAATGGTAGATATTCCCCTTT
GATGTTGGATTAACTACAAATTTTTTCCCCCCAAAAAATTTATGTTTTTT
AATTTCCCCCCCAGCCCTTTTATGTTTTACTGCCTAAAAAAAAGACACAC
ACCTAGGGTGTTTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_e17.g1 MSMg01no413_e17.g1 CHROMAT_FILE:
MSMg01no413_e17.g1 PHD_FILE: MSMg01no413_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:56 2005
         (476 letters)



>mm_chr13_29635921_29636796
          Length = 876

 Score =  698 bits (361), Expect = 0.0
 Identities = 411/452 (90%), Gaps = 38/452 (8%)
 Strand = Plus / Minus

                                                                       
Query: 63  tttttaatacccaggactctgcctaggggatgataccacccacagtggagacaaatctgc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 tttttaatacccaggactctgcctaggggatgataccacccacagtggagacaaatctgc 817

                                                                       
Query: 123 tggaggcatttcatctaatgagagtctctcttccccagtgactgttttgtatcaagttgt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 tggaggcatttcatctaatgagagtctctcttccccagtgactgttttgtatcaagttgt 757

                                                                       
Query: 183 aaaactgatctgtacaagagagaatttgattagttttatagaatatag------------ 230
           |||||||||||||||||||||||||||||||||||| |||||||||||            
Sbjct: 756 aaaactgatctgtacaagagagaatttgattagtttgatagaatatagaatatatatata 697

                                                                       
Query: 231 -------------------------tata-tatattagaatatattattttgatctttaa 264
                                    |||| ||||||||||||||||||||||||||||||
Sbjct: 696 ttattatatattatatatatatatatatattatattagaatatattattttgatctttaa 637

                                                                       
Query: 265 attaccagtagaagtttgctgcctgtaaaggggaaatggtttggatgaatgtggctctta 324
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 attaccagtagaagtttgctgcctgtaaaggggaaatggtttggatgaatgtggctctta 577

                                                                       
Query: 325 gcagttggcaacaaagaaataatcttgctgaaagtgttagtacacactagaggctaaggc 384
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gcagttggcaacaaagaaataatcttgctgaaagtgttagtacacactagaggctaaggc 517

                                                                       
Query: 385 aggagaattaccatcagtttaaggccagttggggctgtataaagggatttanagaagaaa 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 516 aggagaattaccatcagtttaaggccagttggggctgtataaagggatttaaagaagaaa 457

                                           
Query: 445 atataaataaagaagaaaaaataaattttcat 476
           ||||||||||||||||||||||||| ||||||
Sbjct: 456 atataaataaagaagaaaaaataaaatttcat 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)