BAC Information

Click to search

BAC

Clone NameMSMg01-413L04
Chromosome13 (Build37)
Map Location 12,386,893 - 12,387,404
singlet/doubletsinglet
Overlap geneActn2
Upstream geneZp4, Ryr2, LOC100039678, Mtr, LOC100039826
Downstream geneEG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413L04.T7 (MSMg01no413_l04.b1)MSMg01-413L04.TJ (MSMg01no413_l04.g1)
ACCAG510170AG510171
length805731
length of high quality
(start - end)		---512 (68 - 579)
definitionCHROMAT_FILE: MSMg01no413_l04.b1 PHD_FILE: MSMg01no413_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:27 2005CHROMAT_FILE: MSMg01no413_l04.g1 PHD_FILE: MSMg01no413_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTTCTCCCCCCCAATCTGCTACGTTATACGACTCACTATATTTAGAGG
ATCCGCGGAATTCAAAGAATAGTTCTAAATTACTGATTCCTAAGGTGTCA
CTGAATAAGATGACTAAATAATACAGTTGGAGCTTATACGTTTCTGGTAT
CTGCTGTGTCAGGAAATATGATAAAAGCCCCTGATAGATGATCTCGGTTT
GCCCCCCAAAGGCCCCTTTGAGGAAATCTTGAATTTCCCCCTTTTAAAAC
CCTGGGGTCCAAAAAAAATTACCTCCTCCTAACTTATTTTCAATTAAACA
AATAATCTCTTAAGGCTTAAGCAAAATCTCTTAAAACAATAAATTTCCCT
TCCTTGGTTTTGGCGCAACCTAATCCCCTATATTCCCCTTCCCGCCAATC
TTTACAATCTCCCCCAATCGTAATAGTATCTAGCCACCTGTCTTTTGCCT
TTACTAAACTTTCTCCTTTGTCTCGATCCCCTTTCACTAACCCCCTATTT
TGCCCTTCCAACCAGAAATTCCCCCTATTATTTTCTACGACCTCTGCTTT
CACTATGTCCCTGCGTGGCGTCAAACCCCAACCTTTATGTCAGAGCTACA
CATTCTTCCCTTTCCTCTTTTTCATTCCCTCTACCTAGTCCATCCCATTT
CCACTTTTATTCCGTTACCTTATTCTCTACATCTTATCCACCGCCCACAC
CTTATTCTTCTTAATTATTTCCGTTTTATCCTTTTCATTTCACTACTTTC
ATCATCGCCTTTTACTCGTCCTTATATTTTTATTCCCTCCTCACCTTCTT
TTTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAATACTTTACTACTTGGTGTTGGGATATATTCA
TTGCTATCCTGGTTACATGTGGCACCTGGGTCATGAGTTGGACACCTCTG
CTTTAGAACAGGCACAGCGCTCTTCTTGGTCCATCCTAGAAACGTGTTAA
GAGGCAAGTGACTCAAGTTCCCTTCAAGATAATGACCAAGGATTACGTAT
TGGTTCATTGTATTTACTGCTCTTGTAGATTAAACAATGAAACAACATCT
TAAGGCACGCTCATCTCCAACATCCCATCTAGAAAGTTCTTCCATGGATT
CAAGGTCAATAACATGGATACATTCAGGACCCAACCTCTTCAGCTTTGAT
TTCTGAAGGCCAGGGTCATTCCAACCCATAGCCGTAGGGTCTATTCAGGA
GCATTTAGCTGGACAGTCAGGGACCTGAGACCTTGGTTTCCTCGACCTAC
ATATTTCTGTTACTAACTTGCTTGATGTTTTATAAAGTTTGTACTTTAGA
CTAATGATATCTCCCCATTATTCCCTACAGTATATTCAGCCTGCCGTGTA
AGTCTGTGTGAAATCTANAAAAAAAATAATATAAAAAAAGGTGTGAACTG
ATTCATCCCTCTATTTCCCCACCCTGAGCCAGAATGTCCTTCCTTCTCAG
TCCTCTCTTCATCCTGTCCGGCCCCCATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_l04.g1 MSMg01no413_l04.g1 CHROMAT_FILE:
MSMg01no413_l04.g1 PHD_FILE: MSMg01no413_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:27 2005
         (512 letters)



>mm_chr13_12386610_12387521
          Length = 912

 Score =  959 bits (496), Expect = 0.0
 Identities = 508/512 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatactttactacttggtgttgggatatattcattgctatcctggttacatgtggcacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aatactttactacttggtgttgggatatattcattgctatcctggttacatgtggcacct 736

                                                                       
Query: 61  gggtcatgagttggacacctctgctttagaacaggcacagcgctcttcttggtccatcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gggtcatgagttggacacctctgctttagaacaggcacagcgctcttcttggtccatcct 676

                                                                       
Query: 121 agaaacgtgttaagaggcaagtgactcaagttcccttcaagataatgaccaaggattacg 180
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 675 agaaacgtgttaagaggcacgtgactcaagttcccttcaagataatgaccaaggattatg 616

                                                                       
Query: 181 tattggttcattgtatttactgctcttgtagattaaacaatgaaacaacatcttaaggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tattggttcattgtatttactgctcttgtagattaaacaatgaaacaacatcttaaggca 556

                                                                       
Query: 241 cgctcatctccaacatcccatctagaaagttcttccatggattcaaggtcaataacatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cgctcatctccaacatcccatctagaaagttcttccatggattcaaggtcaataacatgg 496

                                                                       
Query: 301 atacattcaggacccaacctcttcagctttgatttctgaaggccagggtcattccaaccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 atacattcaggacccaacctcttcagctttgatttctgaaggccagggtcattccaaccc 436

                                                                       
Query: 361 atagccgtagggtctattcaggagcatttagctggacagtcagggacctgagaccttggt 420
           |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 435 atagccgtagggtctattcaggagtatttagctggatagtcagggacctgagaccttggt 376

                                                                       
Query: 421 ttcctcgacctacatatttctgttactaacttgcttgatgttttataaagtttgtacttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttcctcgacctacatatttctgttactaacttgcttgatgttttataaagtttgtacttt 316

                                           
Query: 481 agactaatgatatctccccattattccctaca 512
           ||||||||||||||||||||||||||||||||
Sbjct: 315 agactaatgatatctccccattattccctaca 284


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |