Query= MSMg01no413_l21.b1 MSMg01no413_l21.b1 CHROMAT_FILE:
MSMg01no413_l21.b1 PHD_FILE: MSMg01no413_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:31 2005
(557 letters)
>mm_chr13_6169790_6170746
Length = 957
Score = 1040 bits (538), Expect = 0.0
Identities = 541/542 (99%)
Strand = Plus / Minus
Query: 1 agactgagtcctgggccagcttgggttgcactgtcagcaagcatccgacaggtcttgtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 agactgagtcctgggccagcttgggttgcactgtcagcaagcatccgacaggtcttgtaa 483
Query: 61 gaatgctcctgatgcctctgatactagaatgtagaaaactgaaaaactgaactgtatgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gaatgctcctgatgcctctgatactagaatgtagaaaactgaaaaactgaactgtatgtg 423
Query: 121 aatgtctactatgctggaaatcaatagcgtccccaatccaacagtgcaaggctgggctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aatgtctactatgctggaaatcaatagcgtccccaatccaacagtgcaaggctgggctgc 363
Query: 181 agtgctgtgtgatttaaccagtttgtagaaggcatactttctctgtatcgcaggctccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agtgctgtgtgatttaaccagtttgtagaaggcatactttctctgtatcgcaggctccct 303
Query: 241 tatgaaggaagccagaacaaatggttacgtgaatactgatagaggcctgaagtgggtttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tatgaaggaagccagaacaaatggttacgtgaatactgatagaggcctgaagtgggtttg 243
Query: 301 gctacacagtatgcaggcacaagcaagagaattccatcacaaagaaagcccccattgaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gctacacagtatgcaggcacaagcaagagaattccatcacaaagaaagcccccattgaat 183
Query: 361 gtaatgctttgcttttcccacctggaaattcttaataactataccatcaaatttgtgctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gtaatgctttgcttttcccacctggaaattcttaataactataccatcaaatttgtgctt 123
Query: 421 tatgagaaaagactgcaaaatgttatgcacagagcctgagaattcaacccacctgtattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tatgagaaaagactgcaaaatgttatgcacagagcctgagaattcaacccacctgtattt 63
Query: 481 tcttgccgttaatgctatgcttgcccctgtgggtcacatgatacacctacctttctggtc 540
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tcttgccgttaatgctgtgcttgcccctgtgggtcacatgatacacctacctttctggtc 3
Query: 541 ct 542
||
Sbjct: 2 ct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_l21.g1 MSMg01no413_l21.g1 CHROMAT_FILE:
MSMg01no413_l21.g1 PHD_FILE: MSMg01no413_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:31 2005
(470 letters)
>mm_chr13_6011333_6012202
Length = 870
Score = 851 bits (440), Expect = 0.0
Identities = 461/468 (98%)
Strand = Plus / Plus
Query: 1 tcactaggaaataaaatggctaacagtgataaatagggaagaaatgttcttggattttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcactaggaaataaaatggctaacagtgataaatagggaagaaatgttcttggattttag 260
Query: 61 tattgtcaaaagttttcaaaaggagcctgaattcttggaataagaatgtataatcagaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattgtcaaaagttttcaaaaggagcctgaattcttggaataagaatgtataatcagaac 320
Query: 121 acccatcccgtgactcaggattgtcagagcaaaagcaaatacagtcacaatgtcctctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acccatcccgtgactcaggattgtcagagcaaaagcaaatacagtcacaatgtcctctca 380
Query: 181 ggttgccaaaacacatagacaatcatcgagaagttggcactatcaacagtgaagggaaat 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 ggttgccaaaacacatagacaatcatcaagaagttggcactatcaacagtgaagggaaat 440
Query: 241 actccaaacacatgcactttaaaacaaaatcaaggagagatcttttaagtagagtatttt 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actccaaacatatgcactttaaaacaaaatcaaggagagatcttttaagtagagtatttt 500
Query: 301 aatgtaataatgttaacaggaaaaaattaaaaataataatgtgtagcaaaggcatctata 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 aatgtaataatgttaacaggaaaaaattaaaaataataatgtgtagcaaaggcatctaca 560
Query: 361 gttatggggttgggaaggtgtcctgtgttttaaaatgtttgctatgcaggtatgaggacc 420
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 gttatggggttgggaaggtgccctgtgtgttaaaatgtttgctatgcaggtatgaggacc 620
Query: 421 tgagttcaaatctatacacacgtgtaaatatatgaacacagcaatgta 468
|||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 621 tgagttcaaatctatacacatgtgtaaatatatgaacacaacaatgta 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
