BAC Information

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BAC

Clone NameMSMg01-414G14
Chromosome13 (Build37)
Map Location 28,879,112 - 29,077,844
singlet/doubletdoublet
Overlap geneLOC626683, 2610307P16Rik, Sox4
Upstream genePrl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1
Downstream geneLOC100041135, Cdkal1, E2f3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414G14.T7 (MSMg01no414_g14.b1)MSMg01-414G14.TJ (MSMg01no414_g14.g1)
ACCAG510714AG510715
length774771
length of high quality
(start - end)		484 (71 - 554)246 (77 - 322)
definitionCHROMAT_FILE: MSMg01no414_g14.b1 PHD_FILE: MSMg01no414_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:27 2005CHROMAT_FILE: MSMg01no414_g14.g1 PHD_FILE: MSMg01no414_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,879,112 - 28,879,595)(29,077,599 - 29,077,844)
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACCTTGTTCACACCCGGCTTTGCAGTGGCAACCCTCCCATGGAA
GTCAAAGCAACCCCTTCCTTTCCTGAAGGTGAGGTGGCACTGTTTCTCCT
CCTCTCCCACCTCTCCTGCTGCAAGCCTGTAAATTTAAAACTCGACACAT
TAAGGAAAAGACGGCTCAGGCCCCTCTGGATCCAATCCATTTTTAAGTGT
GCTCTCGGAGCTTGGCCACTTTACAGATGTTGGAGGAATGAAATATGAGG
AGAGAAAGGGGAGTCTGACATCTTTCAAGAAGCAGATCTGTGGAAGGGGA
GATGCTGAGGACAAATATCAAGGCAGGATGCACCATGCAAACTAACCAAC
CAGATGGATATAATGCTGTAGAACAATAGACGGCCTCTCTGTCCAATCTG
AAGATAACAGGAACTTGCAATTGGGGGCAAGACAAGCTTGGGTGGTAGAA
GGCAAGCTAAGGGCTCTAAGGCTATTCTTACTTCATCTTTATGCTCATTA
TGCCTACACGGACCATGTAAGTAAGGAAGGGTGATCCTACATGAAATGTA
AATATTATCTCCCCACACTGCCTGAATTCTGTCTTCCTGCCTCTATGAAT
CTGAAAAAAGTATATAAAAGGGCTTCATCCTTTATCAAGTCCACTCCCCA
TTCGCAGTCAAGAATTCTGTGGGGCACAAAACTAGAAACCGGGTCAAATC
TCGGGAAATTTTTAATTCTTTTTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTATAAATAATTTCAAAGGGTAC
TCTAGGTGGAGTGAGGGTCACATGCAGAAGAGTGAGAGCACGCGGTCTGT
TTAAATATGTTCAGTATGAGTGAAACACAGCTGTTGCCTCGTGGTTTGAG
CACTGAAGGTTTATCACTACAACAACGCTTGACTTAACTAGCGCAGTTCT
GGAAAGGTATGGAAACCTTTCCCTGACTGTTACAGACATGAGCTTATTAG
GCATGGTATGGATATCACTCTATGATCATTATCACTTTTATCCAAGAAGG
GAGAGAGCTGCAGAGAGGAAGAAGCCCCTACATCTGCTATAGACTGAATC
ACTCGGTTCTCAGGCAGTGGCCTTCAGGAGGTGGCGATAGGAACCTCAAG
TCCTGCCCATCCCTCCCTTCCTCCTTCCTAGGAAGATATACTCTAAAGAT
AATTGGAAAGGAACTGAATCAGTGGGATAGGTCCCTGGTCCTCGATAGAA
AGGACATACAGTTGTATCTTCCAGAGCTTGCCTGAATGATAACAGCCCAT
AAAGTTCAGACACCGACTTGATCCATCAAGAAAAATAAACTGACCAAGAA
AGAGCAGCTTTTTTTTTTTTCTGTTCCAGCCGTCTTTGCCCCAAAAGGGA
TTTTCCTATGTTTATCTAAAATGGGTCTCTTCCTGTACTGGTTTATTGTG
GATGTCGCTAAGCTACTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_g14.b1 MSMg01no414_g14.b1 CHROMAT_FILE:
MSMg01no414_g14.b1 PHD_FILE: MSMg01no414_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:27 2005
         (484 letters)



>mm_chr13_28878912_28879795
          Length = 884

 Score =  859 bits (444), Expect = 0.0
 Identities = 474/484 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cggctttgcagtggcaaccctcccatggaagtcaaagcaaccccttcctttcctgaaggt 60
           ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 cggctgtgcagtggcaaccctcccacggaagtcaaagcaaccccttcctttcctgaaggt 260

                                                                       
Query: 61  gaggtggcactgtttctcctcctctcccacctctcctgctgcaagcctgtaaatttaaaa 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggtggtactgtttctcctcctctcccacctctcctgctgcaagcctgtaaatttaaaa 320

                                                                       
Query: 121 ctcgacacattaaggaaaagacggctcaggcccctctggatccaatccatttttaagtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcgacacattaaggaaaagacggctcaggcccctctggatccaatccatttttaagtgt 380

                                                                       
Query: 181 gctctcggagcttggccactttacagatgttggaggaatgaaatatgaggagagaaaggg 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctctcagagcttggccactttacagatgttggaggaatgaaatatgaggagagaaaggg 440

                                                                       
Query: 241 gagtctgacatctttcaagaagcagatctgtggaaggggagatgctgaggacaaatatca 300
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtctgacatcagccaagaagcagatctgtggaaggggagatgctgaggacaaatatca 500

                                                                       
Query: 301 aggcaggatgcaccatgcaaactaaccaaccagatggatataatgctgtagaacaataga 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 aggcaggatgcaccatgcaaactaaccaaccagatggatacaatgctgtagaacaataga 560

                                                                       
Query: 361 cggcctctctgtccaatctgaagataacaggaacttgcaattgggggcaagacaagcttg 420
           ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 561 cggcctctctgtccaatctgaaggtaacagaaacttgcaattgggggcaagacaagcttg 620

                                                                       
Query: 421 ggtggtagaaggcaagctaagggctctaaggctattcttacttcatctttatgctcatta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtggtagaaggcaagctaagggctctaaggctattcttacttcatctttatgctcatta 680

               
Query: 481 tgcc 484
           ||||
Sbjct: 681 tgcc 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no414_g14.g1 MSMg01no414_g14.g1 CHROMAT_FILE:
MSMg01no414_g14.g1 PHD_FILE: MSMg01no414_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:27 2005
         (246 letters)



>mm_chr13_29077399_29078044
          Length = 646

 Score =  429 bits (222), Expect = e-125
 Identities = 240/246 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctataaataatttcaaagggtactctaggtggagtgagggtcacatgcagaagagtgag 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tctataaataatttaaaagggtactctaggtggagtgagggtcacatgcagaagagtgag 387

                                                                       
Query: 61  agcacgcggtctgtttaaatatgttcagtatgagtgaaacacagctgttgcctcgtggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agcacgcggtctgtttaaatatgttcagtatgagtgaaacacagctgttgcctcgtggtt 327

                                                                       
Query: 121 tgagcactgaaggtttatcactacaacaacgcttgacttaactagcgcagttctggaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgagcactgaaggtttatcactacaacaacgcttgacttaactagcgcagttctggaaag 267

                                                                       
Query: 181 gtatggaaacctttccctgactgttacagacatgagcttattaggcatggtatggatatc 240
           | ||||||  |||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 266 gcatggaagtctttccatgactgttacagacttgagcttattaggcatggtatggatatc 207

                 
Query: 241 actcta 246
           ||||||
Sbjct: 206 actcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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