BAC Information

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BAC

Clone NameMSMg01-414H06
Chromosome13 (Build37)
Map Location 19,072,743 - 19,073,192
singlet/doubletsinglet
Overlap geneAmph
Upstream gene1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2, Vps41
Downstream geneLOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414H06.T7 (MSMg01no414_h06.b1)MSMg01-414H06.TJ (MSMg01no414_h06.g1)
ACCAG510746AG510747
length811811
length of high quality
(start - end)
462 (40 - 501)375 (74 - 448)
definitionCHROMAT_FILE: MSMg01no414_h06.b1 PHD_FILE: MSMg01no414_h06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:30 2005CHROMAT_FILE: MSMg01no414_h06.g1 PHD_FILE: MSMg01no414_h06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGGAATT
CTTATGATGTTTCGCTGGGAGGCAGAAGTCACAAAAGAGTTGTGGCAACA
GAAGTCCGTTTTGGAGTGAGGTATGGTCATAACTATAGCATTGAACCCAC
CATTGAGTTTAGTTTTTAAATGGGAATTGTGGGTTGAGCAGGGATCGCAG
TTTGTGAGGCAGGTGCTGCGGTGGATGAGTTGCTATCCTGAGATTACAAA
GTTGCAAAATCATTTATAACCTATATTAAGCAGATGATGACAATATGACA
TCTATAATAACTATAAGAACACATATACTTTAGTCAATCATGAGCATCAT
AAAATATTACACATGAGGAACCATAGCTTTAAGCATGTGATACTATAAAA
ATATTGGAATATGCAGAGTGATGGATATACTATTTTTTTCAGAGAAAACT
GACTGAATATTTTAAAGCAGTCCCCAGCTCAATCTCATTTACAAGCTCTA
GACGAAGAGTGATAAAAGTGAAAGAGCATGTGCTTTTGGATATGTTTGTG
CTATCAGATAGGTTACTCTCCTTAAGGGTGTTAAAAAAAGGACCTCTTAT
TTTAATTTTTTATGTCTAATCTACCAATCTCCTAATGTACAATTTACTAT
TTCCCACCCTTTAAATGTTTTATGCCTTAATTATAAATGGTTCCAAATTC
TACCCGTTTCCAAATGCTTAACATATTTCCCCATACTTTGCTATTTTAAA
TTTTCGGCCTATAGTGGGTCTCCCTTTTCTTCCCGGTTTATATATTTTTG
CGCTCCTCTTT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTATTTAGGTCTGTACTCTATTTTTA
AATAGGGCTATTTGGTCCTCAGGAGTCTACCTTCTTGGATTCTTCGTATA
TTTTGGATATTAGCCCTCTATCGGATGAATGGTTTGTAAATATCTTTTCT
CAATCTGTGGGTTTCCAGTTTGTCCTATTGATAGGGCCCTTTGCTTTTCA
ATTTTCTGAGGTCCCAAATGTCAATTGTTGCTCTTAAAGTATAGGCCATT
ACTATTTTGTTCAGGAAGTTTTCTCCTGTGCCCAAGTATTTGAGGCTCTT
CTCCACTTTTTCTTCTATTAGATTCAGAGTATCTGGTTTTATGGGGAGGT
CCTTGATCCACTTGGACTTGACCTTTATACTAAAAGATCGAAATGGATCA
ATTTGTATTTTTCTACCTGCTGACTGTTGAAGCAGCACCATTTGTTGAAA
ATGCTGACATTTTTCCACTGAATGGTTTTAGCTTCTTTATTAAAGACCAG
TGATCTTTGGTGTGTGGTCGCTGATCTGGTCTTTTTATTCTTTTTTACTT
GCCTTTCTGCCTGGTTCTAAACCTAGTGGTTTTGTTGACCATTTTTTTCT
TTCTATTATTTTTCGTTCTTTTTTTTTATTCTTAATCCTAATTGTCTATT
TCTTTTTCGCATTATCGCTTTTCCTACTTTCTTTCTTCTCCCTTATTTAT
TCCTTTCTTCTCTCTTATCACACCCCTCTTCTCATATACATTTAATAGCC
TATTTTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_h06.b1 MSMg01no414_h06.b1 CHROMAT_FILE:
MSMg01no414_h06.b1 PHD_FILE: MSMg01no414_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:30 2005
         (462 letters)



>mm_chr13_19072537_19073399
          Length = 863

 Score =  745 bits (385), Expect = 0.0
 Identities = 435/455 (95%), Gaps = 10/455 (2%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcttatgatgtttcgc---tgggaggcagaagtcacaaaagagttgtggcaacag 62
           |||||||||||||||    ||   ||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattcttatgatg----gcaaatgggaggcagaagtcacaaaagagttgtggcaacag 262

                                                                       
Query: 63  aagtccgttttggagtgaggtatggtcataactatagcattgaacccaccattgagttta 122
           ||||| | ||||||||||||| | ||||||||||||||||||||  |||  |||||||||
Sbjct: 263 aagtctggtttggagtgaggtgttgtcataactatagcattgaatgcactgttgagttta 322

                                                                       
Query: 123 gtttttaaatgggaattgtgggttgagcagggatcgcagtttgtgaggcaggtgctgcgg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtttttaaatgggaattgtgggttgagcagggatcgcagtttgtgaggcaggtgctgcgg 382

                                                                       
Query: 183 tggatgagttgctatcctgagattacaaagttgcaaaatcatttataaccta-tattaag 241
           ||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct: 383 tggatgagttgctatcctgagattacaaagttgcaaaatcatttatagc-taatattaag 441

                                                                       
Query: 242 cagatgatgacaatatgacatctataataactataagaacacatatactttagtcaatca 301
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 442 cagatgatgacaatatgacatctataataactataagaacacatagactttagtcaatca 501

                                                                       
Query: 302 tgagcatcataaaatattacacatgaggaaccatagctttaagcatgtgatactataaaa 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tgagcatcataaaatattacacatgaggaaccatagctttaagcatgtgatactataaaa 561

                                                                       
Query: 362 atattggaatatgcagagtgatggatatactattttttt-cagagaaaactgactgaata 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 562 atattggaatatgcagagtgatggatatactattttttttcagagaaaactgactgaata 621

                                              
Query: 421 ttttaaagcagtccccagctcaatctcatttacaa 455
           |||||||||||||||||||||||||||||||||||
Sbjct: 622 ttttaaagcagtccccagctcaatctcatttacaa 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 863
Length adjustment: 10
Effective length of query: 452
Effective length of database: 853
Effective search space:   385556
Effective search space used:   385556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)