Query= MSMg01no414_k03.b1 MSMg01no414_k03.b1 CHROMAT_FILE:
MSMg01no414_k03.b1 PHD_FILE: MSMg01no414_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:44 2005
(541 letters)
>mm_chr13_119737890_119738830
Length = 941
Score = 1009 bits (522), Expect = 0.0
Identities = 534/538 (99%), Gaps = 1/538 (0%)
Strand = Plus / Plus
Query: 5 ggaattctcctctcattc-caattattagttatttcaatttgaagactgtaaatccagaa 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcctctcattctcaattattagttatttcaatttgaagactgtaaatccagaa 263
Query: 64 gtgatgtccacaaagcaataacaaaaaaataaaataaaataataaaataaaataaaatgg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgatgtccacaaagcaataacaaaaaaataaaataaaataataaaataaaataaaatgg 323
Query: 124 agcatgacgtgtgaaataaaaattttaagatatatgctgtcttagctggaaaactcataa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agcatgacgtgtgaaataaaaattttaagatatatgctgtcttagctggaaaactcataa 383
Query: 184 acgaatgggtttgctttttcagaatgaacttctggtttgttttgttgcataactagttga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acgaatgggtttgctttttcagaatgaacttctggtttgttttgttgcataactagttga 443
Query: 244 tccagtcaaaaggatgcccacctccagatgtactaccctcttatgttgcagagtgaccat 303
|||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct: 444 tccagtcaaaaggatgcccacctccagatgtactacccactcaagttgcagagtgaccat 503
Query: 304 tatgctccaagaagcttatcaatttagctgtgtctgtcacaggagaacctgcctgtcccc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tatgctccaagaagcttatcaatttagctgtgtctgtcacaggagaacctgcctgtcccc 563
Query: 364 attacactatcctcccagtacctgaccttaacacaataatgtctacagccctactagact 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 attacactatcctcccagtacctgaccttaacacaataatgtctacagccctactagact 623
Query: 424 gcaataccccagaagctagctgtggtttttgttttccaccagctcatctattccaagtga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcaataccccagaagctagctgtggtttttgttttccaccagctcatctattccaagtga 683
Query: 484 aatactttgcatatggtaggtgagccgattcatagttgtttaatatataaatagcaga 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aatactttgcatatggtaggtgagccgattcatagttgtttaatatataaatagcaga 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no414_k03.g1 MSMg01no414_k03.g1 CHROMAT_FILE:
MSMg01no414_k03.g1 PHD_FILE: MSMg01no414_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:44 2005
(416 letters)
>mm_chr13_119898253_119899068
Length = 816
Score = 804 bits (416), Expect = 0.0
Identities = 416/416 (100%)
Strand = Plus / Minus
Query: 1 catataagcgacaccatcaaactccttgtttttttggttgggtacagcaaacacaagaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 catataagcgacaccatcaaactccttgtttttttggttgggtacagcaaacacaagaca 557
Query: 61 acgatggctgtaattagccactggcaagcaagctgcataaagagatgcaaaatagctcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 acgatggctgtaattagccactggcaagcaagctgcataaagagatgcaaaatagctcag 497
Query: 121 tggcaagtttatgtttcaaaacagcctgtccagccattgtattttgctatttcaagaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tggcaagtttatgtttcaaaacagcctgtccagccattgtattttgctatttcaagaaaa 437
Query: 181 ggaaatcatgtagcactcagaaaaattgaatgtgtaatccatgaagcaacttaaaaaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ggaaatcatgtagcactcagaaaaattgaatgtgtaatccatgaagcaacttaaaaaaga 377
Query: 241 tactgttccaattttttcttttaaaaaagggaactctattcttttaattttagaaacttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tactgttccaattttttcttttaaaaaagggaactctattcttttaattttagaaacttg 317
Query: 301 agagagtaataagggatgcttggtgctggtcagtttttaataatgatgaacaaagacaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agagagtaataagggatgcttggtgctggtcagtttttaataatgatgaacaaagacaca 257
Query: 361 ccagaagagccagtactaaaagcatgagaatggggaatcacatggttctgtctctg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ccagaagagccagtactaaaagcatgagaatggggaatcacatggttctgtctctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space: 328449
Effective search space used: 328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
