Query= MSMg01no415_j23.b1 MSMg01no415_j23.b1 CHROMAT_FILE:
MSMg01no415_j23.b1 PHD_FILE: MSMg01no415_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:03 2005
(273 letters)
>mm_chr13_30986458_30987131
Length = 674
Score = 462 bits (239), Expect = e-135
Identities = 263/271 (97%), Gaps = 1/271 (0%)
Strand = Plus / Minus
Query: 4 gaattcttggtgt-tttcttaaaaaaaaaggcctttatacacatgatctgtatcgaggac 62
||||||||||||| ||| || ||||||| | |||||||||||||||||||||||||||||
Sbjct: 474 gaattcttggtgtctttttttaaaaaaatgtcctttatacacatgatctgtatcgaggac 415
Query: 63 tgggagggcctcctttggacttcagttgttacagtattagtgtacagtcaccctggcaga 122
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 414 tgggagggcctcctttggacttcagttgttacattattagtgtacagtcaccctggcaga 355
Query: 123 tgctgctcatgaaatgattcaatgggagggctcactaccttcctcagagagctaccattc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 354 tgctgctcatgaaatgattcaatgggagggctcactaccttcctcagagagctggcattc 295
Query: 183 ccagattccctccctggtccctgggtcctgaccctgaagctcagatatgacctttgggat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ccagattccctccctggtccctgggtcctgaccctgaagctcagatatgacctttgggat 235
Query: 243 ctttttacattgaggaaaagtgtcaggagag 273
|||||||||||||||||||||||||||||||
Sbjct: 234 ctttttacattgaggaaaagtgtcaggagag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 674
Length adjustment: 9
Effective length of query: 264
Effective length of database: 665
Effective search space: 175560
Effective search space used: 175560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no415_j23.g1 MSMg01no415_j23.g1 CHROMAT_FILE:
MSMg01no415_j23.g1 PHD_FILE: MSMg01no415_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:03 2005
(376 letters)
>mm_chr13_30764823_30765598
Length = 776
Score = 671 bits (347), Expect = 0.0
Identities = 369/379 (97%), Gaps = 6/379 (1%)
Strand = Plus / Plus
Query: 1 aattgctcatatcctgcggatgtttgccacaaaagttctaataccatttgttttaactag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattgctcatatcctgcggatgtttgccacaaaagttctaataccatttgttttaactag 260
Query: 61 taaggacaagaaggcaggcaagccacccctgtgatttttttttttttctttcccaggcct 120
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 taagaacaagaaggcaggcaagccacccctgtga---ttttttttttctttcccaggcct 317
Query: 121 ggtctgaatgg---acatcaatagagagctgttgtgttttaggtttaggggagtaaacag 177
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 318 ggtctgaatggacaacatcaatagagagctgttgcgttttaggtttaggggagtaaacag 377
Query: 178 ggtgtgtctgcttgtacactaattccaaaaacatcttcaattttaccctgttggacggtt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ggtgtgtctgcttgtacactaattccaaaaacatcttcaattttaccctgttggacggtt 437
Query: 238 tgagctgtttattaggagcaaaatctatttctgtttctgccgtggcacagcccaggttaa 297
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgagctgttgatcaggagcaaaatctatttctgtttctgccgtggcacagcccaggttaa 497
Query: 298 cctcttttagaaaacaatgcctgtgtggttgtgatgcatgttttttctattttagggttg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cctcttttagaaaacaatgcctgtgtggttgtgatgcatgttttttctattttagggttg 557
Query: 358 ggtgttaggaagggagggg 376
|||||||||||||||||||
Sbjct: 558 ggtgttaggaagggagggg 576
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space: 281489
Effective search space used: 281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
