Query= MSMg01no415_o11.b1 MSMg01no415_o11.b1 CHROMAT_FILE:
MSMg01no415_o11.b1 PHD_FILE: MSMg01no415_o11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:24 2005
(493 letters)
>mm_chr13_31390280_31391174
Length = 895
Score = 897 bits (464), Expect = 0.0
Identities = 486/494 (98%), Gaps = 2/494 (0%)
Strand = Plus / Plus
Query: 1 attgaggctgtgatggaatca--gtatggtctgttggtccctacccgggatgagcagaca 58
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgaggctgtgatggaatcatagtatggtctgttggtccctacccgggatgagcagaca 260
Query: 59 tgtgttcacaactacctagggaaagtccacacaacaaataatgagtatgatttactaagg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgttcacaactacctagggaaagtccacacaacaaataatgagtatgatttactaagg 320
Query: 119 agaggagagacaatatggagatacctctgaagtataattaagaactgacagtcctgatgc 178
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 agaggagagacaatatggagatacctctgaagtataattaaaaactgacagtcctgatgc 380
Query: 179 atttctaagatgggagctcgggaaactcggacaaggggaactttcgcttgaatgaaggtt 238
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 381 atttctaagatgggagcttgggaaactcagacaaggggaactttcgcttgaatgaagttt 440
Query: 239 ttaactgattttatttcataatctttatatttccattaaaaaaatctctatacccactgc 298
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaactgatttcatttcataatctttatatttccattaaaaaaatctctatacccactgc 500
Query: 299 agtcagctttctatcattatagcaaatattggagataatcaaccaatataggtgaaaggt 358
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 agtcagctttctatcattatagcaaatattggagataatcaaccaatatagttgaaaggt 560
Query: 359 ttactgtgactggcagcctggaaggtttcagtccatgatcagggggctccattgctttgc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttactgtgactggcagcctggaaggtttcagtccatgatcagggggctccattgctttgc 620
Query: 419 agctgtggtgacacatcatagagagcaagcgacagagcaaaactgtaaacctcatgacag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agctgtggtgacacatcatagagagcaagcgacagagcaaaactgtaaacctcatgacag 680
Query: 479 aaaagtaaaagagt 492
||||||||||||||
Sbjct: 681 aaaagtaaaagagt 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 895
Length adjustment: 10
Effective length of query: 483
Effective length of database: 885
Effective search space: 427455
Effective search space used: 427455
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no415_o11.g1 MSMg01no415_o11.g1 CHROMAT_FILE:
MSMg01no415_o11.g1 PHD_FILE: MSMg01no415_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:24 2005
(479 letters)
>mm_chr13_31566969_31567849
Length = 881
Score = 839 bits (434), Expect = 0.0
Identities = 470/482 (97%), Gaps = 4/482 (0%)
Strand = Plus / Minus
Query: 1 ttaaggctgggacacatggcaagtttgcagacagctcagggtagaacatggggc-ggggg 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 681 ttaaggctgggacacatggcaagtttgcagacagctcagggtagaacatggggcgggggg 622
Query: 60 gaggggaggactaactctagcttcaactcaagtatgggaaaagcc-aagacttagtattt 118
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 621 gaggggaggactaactctagcttcaactcaagtatgggaaaagccaaagacttaatattt 562
Query: 119 ccagagggaatattctgcagactggagacttagaagggctggtcttggtggtggatattc 178
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 ccagagggaatattctgcagactggagacttagaagggctgatcttggtggtggatattc 502
Query: 179 ctgattctggtgtggagtttgctctgttgcaggacagagaccagcagggaggataaactg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgattctggtgtggagtttgctctgttgcaggacagagaccagcagggaggataaactg 442
Query: 239 a-tnctggttgaaagcctttctgcagtgctcaaggctaaagtgatttctggggacatttt 297
| | | || ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 agt-ccggcagaaagcctttctgcagtgcccaaggctaaagtgatttctggggacatttt 383
Query: 298 agaagtaagaatagagatctctcctttggtttactttgttttatgtttatccagggataa 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agaagtaagaatagagatctctcctttggtttactttgttttatgtttatccagggataa 323
Query: 358 aaatagctttaaaattacactgcggcaaatgatcacagtagagattttaaaaacagcaca 417
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 322 aaatagctttaaaattacactgcggcaaatgatcacagtagagatttaaaaaacagaaca 263
Query: 418 gggagctataacaaaattaacacagcctgaacttttgcttccctgtgcctgtagctgtct 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gggagctataacaaaattaacacagcctgaacttttgcttccctgtgcctgtagctgtct 203
Query: 478 gt 479
||
Sbjct: 202 gt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 881
Length adjustment: 10
Effective length of query: 469
Effective length of database: 871
Effective search space: 408499
Effective search space used: 408499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
