BAC Information

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BAC

Clone NameMSMg01-416G12
Chromosome13 (Build37)
Map Location 111,911,342 - 111,911,872
singlet/doubletsinglet
Overlap genenone
Upstream geneRab3c, EG432803, 9830130M13Rik, Plk2, LOC100040614, LOC668159
Downstream gene4732495G21Rik, LOC100040640, EG621953, Gpbp1, LOC100040666, Mier3, Map3k1, LOC668181
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416G12.T7 (MSMg01no416_g12.b1)MSMg01-416G12.TJ (MSMg01no416_g12.g1)
ACCAG512231AG512232
length725734
length of high quality
(start - end)		545 (24 - 568)80 (75 - 154)
definitionCHROMAT_FILE: MSMg01no416_g12.b1 PHD_FILE: MSMg01no416_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:01 2005CHROMAT_FILE: MSMg01no416_g12.g1 PHD_FILE: MSMg01no416_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCACTAC
CATTTCATTTCTGTCTCACCTTTTCCCTGGCTCTAAGGAATCTGAGGTGT
TTCCTGACTGCTTCCCAACCCTGTCCTTGAAGAGTGGTGGTCTGGCCCCA
TTGCTTTTCAGTTTGGTTGTTCATTGCTAATAAGTCCAATCACCTATTGA
CCATCACACAGGTTTTCCTTGTTTTAAGAAGGTGTGATACAATATGTTAT
TAGGAAATCATACTTTTATTTTAATAACAAAGTAAAAGAAAAGCAAAGAG
AGCTTCACTGTGAGAGATTCTTAGTTACTTTAAAGATTTTGATCTTGCTT
TAAGTCATTTATTTATTTAAGCCCAGGAAGTTTGGCTTTTTATTTTTATT
TTTGTGGGGGGGAGGAAAGGGTTTATTGAGCTTACNCTTCCACACTGTTG
TTCATCACCAAGGAAGTCAGGACTGGAACTCAAGCAGTTCAGAAAGCAGG
AGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGATTCCCCT
GGCTTGCTCAGCCTGCTCTCTATTTTTTTTAATTAAGTATTTTCCTTATT
TACATTTCCCATGCTATCCCAAAGTCCCCCATAACCTCCCCCCCATTTTC
CTCTTACCACCCAATTCCCCCTTTTTTGCCCCTGGAATTTCTCCTGTACT
GGGGCCAAATAAATTCTGACAAGCC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATCATCTGACTTTAGGTTAAAATAT
AGTGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTGTGTGTGTGTGTGTGTGTGTGTGTCTCTCTCTCTCTGGTATGTGTCG
CAGTGTTGAAATTGAGCCATGGTGCTGATTTTCTCTATCTGGACAGCAAT
TCTCTTATTAAGAAGAAAATCATTAATGAGAAATAGTGGTTGAAGTATAC
TTTGTGTGAATTTAAACCTAATGTTTGGGGACAGACCCACAGGAGGGGTA
TGCCAACTATTATAGCCAATACCTTCCCTCATCTCACAGAAGCCACTGTT
CCAATCCTCTAATGAGAGTGAGAACAGGAGACAGGAACAGAAGGGGCAGC
CCCTCTAAAAGGAGGTGCCTCAAAAGCAGCAGTTCCAGAATGCCTTTGGG
TCTCTCACTAGATATACCAGAAGGGAGTTCTGGGTTACCCTCTTGAAAGG
AAGCACCACTGTCCAGTGAAGGGTGAATGTGAGGGTGGAGCCCACGAGTC
CAGCCATACATTAAAAATCCCTTCGAGAGAAAAACTCTAGAAGTGGGACG
TCAAGAATTCTAGGATAAAAAAGGAATCTAAAGGGTACTCAAAATATTAA
CCAGAAAGTAGAAATAATTATTATTACCATGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_g12.b1 MSMg01no416_g12.b1 CHROMAT_FILE:
MSMg01no416_g12.b1 PHD_FILE: MSMg01no416_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:01 2005
         (545 letters)



>mm_chr13_111911289_111912233
          Length = 945

 Score =  986 bits (510), Expect = 0.0
 Identities = 525/531 (98%), Gaps = 2/531 (0%)
 Strand = Plus / Minus

                                                                       
Query: 17  gaattcactaccatttcatttctgtctcaccttttccctggctctaaggaatctgaggtg 76
           |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 584 gaattcactaccatttaatttctgtctcaccttttctctggctctaaggaatctgaggtg 525

                                                                       
Query: 77  tttcctgactgcttcccaaccctgtccttgaagagtggtggtctggccccattgcttttc 136
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tttcctgactgcttcccaatcctgtccttgaagagtggtggtctggccccattgcttttc 465

                                                                       
Query: 137 agtttggttgttcattgctaataagtccaatcacctattgaccatcacacaggttttcct 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 agtttggttgttcattgctaataagtccaatcacctattgaccatcacacaggttttcct 405

                                                                       
Query: 197 tgttttaagaaggtgtgatacaatatgttattaggaaatcatacttttattttaataaca 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tgttttaagaaggtgtgatacaatatgttattaggaaatcatacttttattttaataaca 345

                                                                       
Query: 257 aagtaaaagaaaagcaaagagagcttcactgtgagagattcttagttactttaaagattt 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aagtaaaagaaaagcaaagagagcttcactgtgagagattcttagttactttaaagattt 285

                                                                       
Query: 317 tgatcttgctttaagtcatttatttatttaagcccaggaagtttggctttttatttttat 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tgatcttgctttaagtcatttatttatttaagcccaggaagtttggctttttatttttat 225

                                                                       
Query: 377 ttttgtgg--gggggaggaaagggtttattgagcttacncttccacactgttgttcatca 434
           ||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 224 ttttgtggtggggggaggaaagggtttattgagcttacacttccacactgttgttcatca 165

                                                                       
Query: 435 ccaaggaagtcaggactggaactcaagcagttcagaaagcaggagctgatgcagaggcca 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 ccaaggaagtcaggactggaactcaagcagttcagaaagcaggagctgatgcagaggcca 105

                                                              
Query: 495 tggagggatgttctttactggcttgattcccctggcttgctcagcctgctc 545
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 tggagggatgttctttactggcttgattcccctggcttgctcagcctgctc 54


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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