BAC Information

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BAC

Clone NameMSMg01-416I22
Chromosome13 (Build37)
Map Location 3,635,799 - 3,636,250
singlet/doubletsinglet
Overlap geneAsb13
Upstream geneLOC667375, LOC544917, LOC236294, Speer6-ps1, LOC674228, LOC667411, LOC100039182, 2810429I04Rik, Gdi2
Downstream geneCalml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416I22.T7 (MSMg01no416_i22.b1)MSMg01-416I22.TJ (MSMg01no416_i22.g1)
ACCAG512346AG512347
length752744
length of high quality
(start - end)		457 (61 - 517)452 (58 - 509)
definitionCHROMAT_FILE: MSMg01no416_i22.b1 PHD_FILE: MSMg01no416_i22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:13 2005CHROMAT_FILE: MSMg01no416_i22.g1 PHD_FILE: MSMg01no416_i22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTAT
TATATTCGCATATTAGTCCCCTATCTGATTTAGGATTGGTAAAGATCCTT
TCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAATGTCTTTTGCCTT
ACAGAAACTTTGCAATTTTATGAGGTCCCATTTGTCGATTCTCGATCTTA
CAGCACAAGCCATTGCTGTTCTATTTAGGAATTGTTTTCCCTGTGCCCAT
ATCTTTGAGGCTTTCCCCCACTTTCTCCTCTGTAAGTTTCACTGTCTCTG
GTTTTATATGGAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGA
GATAGGCATGGATCAATTCGCATTCTTCTACATGACAACTGCCAGTTGTG
CCAGCACCATTGGTTGAAAATGCTGTCTTTTTTCCACAGGATGGTTTTAG
CTCTCTTGTCAAAGATTAAGTGACCATAGGTGTGTGGGTTCATTTATGGA
CCCTCAATTCTATTCCATTGGCCTACTTGTCTGTCACTATACCAGGACCA
TGCAGTTTTTATCCCAAATGGTCTGGAAGAAAACCTTAGGTCCAGCCTGG
GGATTTCCCCCCAAGGTCTTTTTTCTTTAAGAAAAAGTTTGCCAATTTTA
AGGTTTTTGGTATTCCCAAGAATTTGCGAATGCCCCTTTCTAATCTTTTT
AAAAAATATAATGGAAATTTGTAGGGGAATGCTTCGACCCCGCGAAATGT
TT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAAAGAGAACTTGTTGACAAACAAGCTTGAAAGCATACCGGAGG
CCGAAAAAGTTTAAAGAAAATAATAGTCAAGTAATAAACACGTTTATGAA
CAAAACAGCACGTTAATATCTTTTCTGTAACATGGCCCTGTGAAAAGTCA
CCTCCTTCACAAGAAAACTAAGGTGGCTGGTTGCCAATGAAGCCTTTTCT
CAAGTTCTTCAGAATGAAGAAAATAAGCCAGGCCTGAAAGTTCTTACTGG
TAATCTCAGCTAGGTGGCCCAGATACGCTGTGAATTTAAGGCCAGCTCAG
GCTACTACCAAGGACCTCTCTCAAAAAGTAAAAAAACAAACAAGAAAAGA
TACTTGGCTTGAAGCCCAGGCTCGCTGTGTTTTGTGATCGAACTGTGGGA
ACTAAGGGAGTGTACCCTCACTTAATAAACACACCAGGATGACTAAAGGC
AGGGAAGGAGGGCGATCACGTGTTCTAGGTGTTCTAAGTGAGCTCCTTTT
CACCAGGGAGAGGAATCGCTCTTTCTGGGCCCGGCCGCCTGGCCCGCGGG
TTTCCTTGTTCTTTAAAATAATTGCCACCCGTTTCACTTTCCCCACTCCC
CTTTACTTTTTTTTTTTAATAAAACTTTAAAGTGCGGGCCCCGGCCCCCT
CTTGAGGAAAATTTATTTTAATTTTTACCCCTTGGGGGGTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_i22.g1 MSMg01no416_i22.g1 CHROMAT_FILE:
MSMg01no416_i22.g1 PHD_FILE: MSMg01no416_i22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:13 2005
         (452 letters)



>mm_chr13_3635599_3636450
          Length = 852

 Score =  866 bits (448), Expect = 0.0
 Identities = 451/452 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagagaacttgttgacaaacaagcttgaaagcataccggaggccgaaaaagtttaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagagaacttgttgacaaacaagcttgaaagcataccggaggccgaaaaagtttaaaga 260

                                                                       
Query: 61  aaataatagtcaagtaataaacacgtttatgaacaaaacagcacgttaatatcttttctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaataatagtcaagtaataaacacgtttatgaacaaaacagcacgttaatatcttttctg 320

                                                                       
Query: 121 taacatggccctgtgaaaagtcacctccttcacaagaaaactaaggtggctggttgccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacatggccctgtgaaaagtcacctccttcacaagaaaactaaggtggctggttgccaa 380

                                                                       
Query: 181 tgaagccttttctcaagttcttcagaatgaagaaaataagccaggcctgaaagttcttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaagccttttctcaagttcttcagaatgaagaaaataagccaggcctgaaagttcttac 440

                                                                       
Query: 241 tggtaatctcagctaggtggcccagatacgctgtgaatttaaggccagctcaggctacta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtaatctcagctaggtggcccagatacgctgtgaatttaaggccagctcaggctacta 500

                                                                       
Query: 301 ccaaggacctctctcaaaaagtaaaaaaacaaacaagaaaagatacttggcttgaagccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaaggacctctctcaaaaagtaaaaaaacaaacaagaaaagatacttggcttgaagccc 560

                                                                       
Query: 361 aggctcgctgtgttttgtgatcgaactgtgggaactaagggagtgtaccctcacttaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggctcgctgtgttttgtgatcgaactgtgggaactaagggagtgtaccctcacttaata 620

                                           
Query: 421 aacacaccaggatgactaaaggcagggaagga 452
           |||| |||||||||||||||||||||||||||
Sbjct: 621 aacataccaggatgactaaaggcagggaagga 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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