Query= MSMg01no416_n08.b1 MSMg01no416_n08.b1 CHROMAT_FILE:
MSMg01no416_n08.b1 PHD_FILE: MSMg01no416_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:32 2005
(477 letters)
>mm_chr13_9240055_9240931
Length = 877
Score = 833 bits (431), Expect = 0.0
Identities = 466/481 (96%), Gaps = 8/481 (1%)
Strand = Plus / Minus
Query: 4 acagagaaaccctggtctcgaaaaacaaaaaacc-aaaaaacaaaacaacaacaac---- 58
||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 528 acagagaaaccct-gtcttgaaaaacaaaaaaccaaaaaaacaaaacaacaacaacaaca 470
Query: 59 --aacaaaaaacaaaaagaaagagtaacgggggaagtaagcaaagcacatgatttgcatg 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aaaacaaaaaacaaaaagaaagagtaacgggggaagtaagcaaagcacatgatttgcatg 410
Query: 117 tgtgaagaaggtgtcataatgaactcattacgtggtatgttaagactattcaggttggaa 176
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 409 tgtgaagaaggtgtcataatgaactcattacatggtatgttaagactattcaggttggaa 350
Query: 177 atttcatatatatctaatactacctgaaatgctcaccacaacacaaatttagcacttatt 236
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atttcctatatatctaatactacctgaaatgctcaccacaacacaaatttagcacttatt 290
Query: 237 ttcattactcattgacttagtttttcactgctgtgtacagacaccatgaccaagccaact 296
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 289 ctcattactcattgacttagggtttcactgctgtgaacagacaccatgaccaagccaact 230
Query: 297 cttataagaacaacatttaattggagctggtttacaggttcagaggtccatccagtatca 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 cttataagaacaacatttaattggagctggtttacaggttcagaggtccatccagtatca 170
Query: 357 tcaaggtgggagcatggcagcataaaggcaggcatggccaaggaggagctgagagttcta 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tcaaggtgggagcatggcagcataaaggcaggcatggccaaggaggagctgagagttcta 110
Query: 417 catcttcatctaaaggctgctagcagaatactgccttccaggcagctaggatgaggggat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 catcttcatctaaaggctgctagcagaatactgccttccaggcagctaggatgaggggat 50
Query: 477 g 477
|
Sbjct: 49 g 49
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_n08.g1 MSMg01no416_n08.g1 CHROMAT_FILE:
MSMg01no416_n08.g1 PHD_FILE: MSMg01no416_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:32 2005
(482 letters)
>mm_chr13_9066089_9066970
Length = 882
Score = 859 bits (444), Expect = 0.0
Identities = 477/498 (95%), Gaps = 16/498 (3%)
Strand = Plus / Plus
Query: 1 agtgataatggttttgtttgggatgaataaacaaacctgcttattctattttgtgggtga 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgataagggttttgtttgggatgaataaacaaacctgcttattctattttgtgggtga 260
Query: 61 catgagtcagttccttaatgctaaaaaaacctagcagttcagaatagtgactcccagttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgagtcagttccttaatgctaaaaaaacctagcagttcagaatagtgactcccagttt 320
Query: 121 acaggtgagtaaatcaaggttcagaaagagtacgcaacttaaagttcatgatcaaggcaa 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 acaggtgagtaaatcaaggttcagaaagaatacgcaacttaaagttcatgatcaaggcaa 380
Query: 181 gaaccagaacagggctccctctttcccactgtaggctttcttgcagaatcatctgcagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaccagaacagggctccctctttcccactgtaggctttcttgcagaatcatctgcagat 440
Query: 241 atcactagcattatctggaacctaaagacaaaagtaactgtgactcaaagaaggataaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcactagcattatctggaacctaaagacaaaagtaactgtgactcaaagaaggataaga 500
Query: 301 aggaccttgagaaagaacttcctcccccaccccaacactctcagtatgtgcagtgtgtgt 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 aggaccttgagaaagaacttcctcccccaccccaacactctcagtatgtgtagtgtgtgt 560
Query: 361 atgtgtgccagagaacagctctaagttgtatacacacacacacacacacacacacac--- 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtgtgccagagaacagctctaagttgtatacacacacacacacacacacacacacaca 620
Query: 418 -------------tgttatgtctcaagagctgtcaatcgtgtctctttgagacagggtct 464
||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 cacacacacacactgttatgtctcaagagctgtcaatcttgtctctttgagacagggtct 680
Query: 465 ttcacttgcctggagctc 482
|||||||||||||||||
Sbjct: 681 ctcacttgcctggagctc 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
