BAC Information

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BAC

Clone NameMSMg01-416N17
Chromosome13 (Build37)
Map Location 31,424,158 - 31,605,618
singlet/doubletdoublet
Overlap geneG630018N14Rik, LOC100042491
Upstream geneAgtr1a, Uqcrfs1, Dusp22, LOC666443, Irf4, Exoc2, Hus1b, EG432743, LOC100041257, LOC100041266
Downstream geneFoxq1, LOC100041312, Foxf2, Foxc1, 4930548F15Rik, Gmds, LOC666212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416N17.T7 (MSMg01no416_n17.b1)MSMg01-416N17.TJ (MSMg01no416_n17.g1)
ACCAG512574AG512575
length720742
length of high quality
(start - end)		611 (19 - 629)480 (60 - 539)
definitionCHROMAT_FILE: MSMg01no416_n17.b1 PHD_FILE: MSMg01no416_n17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:34 2005CHROMAT_FILE: MSMg01no416_n17.g1 PHD_FILE: MSMg01no416_n17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,605,277 - 31,605,618)(31,424,158 - 31,424,637)
sequence
GACTCCTATATCGAGAGGATCCGCGGAATTCATATATCTTACTATCAGTA
ACACTGAGTACTGGGGTATCTCCACAATGCTGATCCTCTTGCATGACACC
AAGAACAGGGCTTAGGAAATGATGTGTTGATTGCCATGGGAAGAGGGGCA
TCATGGTCTCTGTATTAATTGCTTTTGCATGGCTGTGACCAGAACACCCA
TCCAAGTCACTTAAGGTGGGAATAGTTTATTTTGGCTCTGGATTTCAAAT
GGTTTCATCCCATCACACTGGGGAGGACATGGTGGCAGGGACACAGGGTG
AAGACTGTTTACATCATGCCGGACCAGACCAGCAAGCAAAGAAAGGGATT
GGTGGCAACCGACTTTGTCCTTCTCTTTTACTCAGTTTGGGCTCCTCCGT
GGGATGGTGCCGCTCACATTCAAAGTGGTCTACCTGCTTTCAATTAACCC
CCTCTGAAAACTCTCTTACAGCCATGCCCAGAGGTGCCTCAACCTCTGAG
GTGATGCTACAACCCATCAAGTTGATCCTGTGGCCTGATCATCATATAGG
ATCCTTGTGTTCCCTAAACCCCGCCCATTTGATCTGAATTGCTTTGTTCT
ATATTTTGATATTGGCTGCATCTGACCAAGAGAATAGCTGTATTACATTT
TTTATGTTACCCNGGAAGATGAACGAAGACGACTCCCGAGAATTTTAAGA
AAACCTTTCAGTTTTTTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTTACTTTCCTTTAATTTTAGCAATGGCTGCTATGCACAC
GATTCTGAAGGGTGCTCTATCAGCTGTGACAGAGGCCCCACCAGGTATCC
AGCCCACCCAGCTTTGGGTTCAAGGTCTACCCGTGGCTGGTTCCCTTCCT
TTCCTTTGGAACAGGTCAGGGCAGGTCCCCTGTGAGCTCAGCACGGAGGC
GGTGGTGTCAGTGTTTCTGCAGAGAGGTCTGGGGAGGGAGGTGGTTGTGA
AAGACATGGAGGAAGCTTAGCATAGAAGGGTAACCACATCTTATAGTGGA
GGGGATTTATTGTAAGGCTGGACACGAGTGGAGATAGGACCAAAGCAGAC
TGCAGGAATTGCAGCAGGCAACTCCTCAGAAAATCCCCTGGGAGATATTC
CAGTCGGAACCAGTCTCCTCCCTCTTCACACTGAGCAAGTGCTTTCTAGT
CTCTCATGCTCTTCCTCTGGCCTGCGCAGATTCTTCAGAGATGCACCAGG
ATGCTTACTGTATCCCCCCTAGCCAGCCGCTTGGGTAATTGTATTAATTT
CTAAAGGCCGATTTAAACAGCTTCTGGAAATTCAGTGAAAATTTTTCCTG
TTGGGACAATGAAGGCAAAAAGGGCCTTTCCCTTGGGCCGGACCCCCAAA
AAGAACTCCACCTCCCCCACAAGGGGTAGTTCTCAAACACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_n17.b1 MSMg01no416_n17.b1 CHROMAT_FILE:
MSMg01no416_n17.b1 PHD_FILE: MSMg01no416_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:34 2005
         (611 letters)



>mm_chr13_31605277_31606287
          Length = 1011

 Score =  661 bits (342), Expect = 0.0
 Identities = 342/342 (100%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcatatatcttactatcagtaacactgagtactggggtatctccacaatgctgatc 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gaattcatatatcttactatcagtaacactgagtactggggtatctccacaatgctgatc 283

                                                                       
Query: 68  ctcttgcatgacaccaagaacagggcttaggaaatgatgtgttgattgccatgggaagag 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ctcttgcatgacaccaagaacagggcttaggaaatgatgtgttgattgccatgggaagag 223

                                                                       
Query: 128 gggcatcatggtctctgtattaattgcttttgcatggctgtgaccagaacacccatccaa 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gggcatcatggtctctgtattaattgcttttgcatggctgtgaccagaacacccatccaa 163

                                                                       
Query: 188 gtcacttaaggtgggaatagtttattttggctctggatttcaaatggtttcatcccatca 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 gtcacttaaggtgggaatagtttattttggctctggatttcaaatggtttcatcccatca 103

                                                                       
Query: 248 cactggggaggacatggtggcagggacacagggtgaagactgtttacatcatgccggacc 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 cactggggaggacatggtggcagggacacagggtgaagactgtttacatcatgccggacc 43

                                                     
Query: 308 agaccagcaagcaaagaaagggattggtggcaaccgactttg 349
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  agaccagcaagcaaagaaagggattggtggcaaccgactttg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no416_n17.g1 MSMg01no416_n17.g1 CHROMAT_FILE:
MSMg01no416_n17.g1 PHD_FILE: MSMg01no416_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:34 2005
         (480 letters)



>mm_chr13_31423958_31424837
          Length = 880

 Score =  874 bits (452), Expect = 0.0
 Identities = 473/480 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttactttcctttaattttagcaatggctgctatgcacacgattctgaagggtgctcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttactttcctttaattttagcaatggctgctatgcacacgattctgaagggtgctcta 260

                                                                       
Query: 61  tcagctgtgacagaggccccaccaggtatccagcccacccagctttgggttcaaggtcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagctgtgacagaggccccaccaggtatccagcccacccagctttgggttcaaggtcta 320

                                                                       
Query: 121 cccgtggctggttcccttcctttcctttggaacaggtcagggcaggtcccctgtgagctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccgtggctggttcccttcctttcctttggaacaggtcagggcaggtcccctgtgagctc 380

                                                                       
Query: 181 agcacggaggcggtggtgtcagtgtttctgcagagaggtctggggagggaggtggttgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcacggaggcggtggtgtcagtgtttctgcagagaggtctggggagggaggtggttgtg 440

                                                                       
Query: 241 aaagacatggaggaagcttagcatagaagggtaaccacatcttatagtggaggggattta 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagacatggaggaagcctagcatagaagggtaaccacatcttatagtggaggggattta 500

                                                                       
Query: 301 ttgtaaggctggacacgagtggagataggaccaaagcagactgcaggaattgcagcaggc 360
           |||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 ttgtaaggctggacattagtggagataggaccgaagcagactgcaggaattgcagcaggc 560

                                                                       
Query: 361 aactcctcagaaaatcccctgggagatattccagtcggaaccagtctcctccctcttcac 420
           ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 aactcctcagaaagtcccctgggaggtattccagtcggaaccagtctcctccctcttcac 620

                                                                       
Query: 421 actgagcaagtgctttctagtctctcatgctcttcctctggcctgcgcagattcttcaga 480
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actgagcaaatgctttctagtctctcatgctcttcctctggcctgcgcagattcttcaga 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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