Query= MSMg01no416_p05.b1 MSMg01no416_p05.b1 CHROMAT_FILE:
MSMg01no416_p05.b1 PHD_FILE: MSMg01no416_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:41 2005
(536 letters)
>mm_chr13_37411882_37412823
Length = 942
Score = 717 bits (371), Expect = 0.0
Identities = 417/435 (95%), Gaps = 6/435 (1%)
Strand = Plus / Plus
Query: 108 tgtctgtcccatatccctccagcctccttgtctgtcccatatccctccagcctccttgtc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tgtctgtcccatatccctccagcctccttgtctgtcccatatccctccagcctccttgtc 367
Query: 168 tgtcccatatccctccagcctccttgtctttgagagtaaagcctctgttttgcccttgat 227
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 368 tgtcccatatccctccagcctccttgtctttgagagtaaagcctctgttttttccttgat 427
Query: 228 gtcacttcatgactggctag-gggggg-----gggggtcacagtgcacatttcttgtaga 281
|||||||||||||||||||| |||||| |||||||||||||||||||||||| |||
Sbjct: 428 gtcacttcatgactggctagtggggggtgggggggggtcacagtgcacatttcttggaga 487
Query: 282 atgtagacatcacttcctgtgagggtacaggctccaaggtcacaagcctttgtcctctgc 341
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 488 atgtagacatcacttcctgtgagggtacaggctccaaggtcacaggcctttgtcctctgc 547
Query: 342 tctgctactcccatccgaagctggagtgagtagccaactggtgaacatcagctaaaatct 401
|| ||| |||||||||||||||||||||||| ||||||||||||| ||||||| ||||||
Sbjct: 548 tccgctgctcccatccgaagctggagtgagtggccaactggtgaaaatcagctcaaatct 607
Query: 402 ttaggatctaatgctgtgaactcagaagggatgggcagaaggacagatcattgggactcg 461
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 608 ttaggatctaatgctgtgaactcagaagggatgggcagaaggacagatcattgggactgg 667
Query: 462 ggtctatcttaagatgccaggttgcatccagagacttccccacctagggatgcatcctat 521
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 668 ggtctatcttaagatgccaggttgcatccagagacttccccacctggggatgcatcccat 727
Query: 522 atacagttaccaaac 536
|||||||||||||||
Sbjct: 728 atacagttaccaaac 742
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 164 tgtctgtcccatatccctccagcctccttgtct 196
|||||||||||||||||||||||||||||||||
Sbjct: 56 tgtctgtcccatatccctccagcctccttgtct 88
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 2
Length of query: 536
Length of database: 942
Length adjustment: 10
Effective length of query: 526
Effective length of database: 932
Effective search space: 490232
Effective search space used: 490232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_p05.g1 MSMg01no416_p05.g1 CHROMAT_FILE:
MSMg01no416_p05.g1 PHD_FILE: MSMg01no416_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:41 2005
(505 letters)
>mm_chr13_37455676_37456580
Length = 905
Score = 750 bits (388), Expect = 0.0
Identities = 428/454 (94%), Gaps = 20/454 (4%)
Strand = Plus / Minus
Query: 1 ttcctgcatctcttacctcaatgaaaacaagtcagactgaatccatcagatacctggctc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ttcctgtatctcttacctcaatgaaaacaagtcagactgaatccatcagatacctggctc 395
Query: 61 agccagcaagctgtcttccttctggggaggagagggatgcttccctgggaaactatcctt 120
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 394 agccagcaagctgtcttccttctggggaggagagagatgcttctctgggaaactatcctt 335
Query: 121 gctgattgcatcttataattggtggagcaaagtgcatggagaacagggtcccaggggcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gctgattgcatcttataattggtggagcaaagtgcatggagaacagggtcccaggggcag 275
Query: 181 gagtgatgcaggattataagctcccgcaagtccgggctcagggaggaaaagaacagttgc 240
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 274 gagtgatgcaggattacaagctcccgcaagtccgggctcggggaggaaaagaacagttgc 215
Query: 241 tggaggctgtgc--------------------ttcttaacagagtagaaggttcatttct 280
|||||||||||| ||||||||||||||||||||||||||||
Sbjct: 214 tggaggctgtgcttttgtgccagcaaaacaaattcttaacagagtagaaggttcatttct 155
Query: 281 ctgtctccccagtcaacaagtcttatccctattcgttctcttcccctttagaggataaaa 340
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 154 ctgtctccccagtcaacaagtcttatccctattcattctcttcccctttagaggataaaa 95
Query: 341 aaatggttctcctaataaatatataaaggattacatggaacgatagaaagctgacacaga 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 aaatggttctcctaataaatatataaaggattacatggaacgatagaaagctgacacaga 35
Query: 401 aaagaagccagtaaaccaagcctccgatgaacca 434
||||||||||||||||||||||||||||||||||
Sbjct: 34 aaagaagccagtaaaccaagcctccgatgaacca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
