Query= MSMg01no418_h02.b1 MSMg01no418_h02.b1 CHROMAT_FILE:
MSMg01no418_h02.b1 PHD_FILE: MSMg01no418_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:38 2005
(570 letters)
>mm_chr13_80272962_80273930
Length = 969
Score = 930 bits (481), Expect = 0.0
Identities = 496/501 (99%), Gaps = 1/501 (0%)
Strand = Plus / Minus
Query: 70 ttatttatttatttatttatttatttacagatttaaaatcttttagattctgtgtcctaa 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ttatttatttatttatttatttatttacagatttaaaatcttttagattctgtgtcctaa 737
Query: 130 ggttagtctatgtagaaagtcttcagggaggcacacattattttggacttctaagttgtt 189
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 736 ggttagtctatgtagaaagtctttagggaggcacacattattttggacttctaagttgtt 677
Query: 190 tatgtttttgtgatgtgacctgggggtatggatttattttactgattcactgagagctgg 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tatgtttttgtgatgtgacctgggggtatggatttattttactgattcactgagagctgg 617
Query: 250 gagattgagtcctgcctatattgatgcctatgtttaatttttattttgccaaaacatggt 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gagattgagtcctgcctatattgatgcctatgtttaatttttattttgccaaaacatggt 557
Query: 310 tgatttcctatcatgtaataggaatgtgcaaggtagacattgcggtactcagtgctgatt 369
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 556 tgatttcctatcatgtaataggaatgtgcaaggtaggcattgcggtactcagtgctgatt 497
Query: 370 attggagagacgggagtaattcttcagtggtaactggttgttaaggatttattaggggtg 429
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 attggagagacaggagtaattcttcagtggtaactggttgttaaggatttattaggggtg 437
Query: 430 ccatacattgcttggtggaaaatttaagaaagctcacttgtctaaacctccgtgggtgct 489
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 436 ccatacattgcttggtggaaaatttaagaaagctcacttgtctaaaccttcgtgggtgct 377
Query: 490 ttggcctggaaagacagcagtatatgaaacttggcagactcataaataaagaaaaaaaat 549
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 376 ttggcctggaaagacagcagtatatgaaacttggcagactcataaataaag-aaaaaaat 318
Query: 550 ctcataaatttaggtcctggc 570
|||||||||||||||||||||
Sbjct: 317 ctcataaatttaggtcctggc 297
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 969
Length adjustment: 10
Effective length of query: 560
Effective length of database: 959
Effective search space: 537040
Effective search space used: 537040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_h02.g1 MSMg01no418_h02.g1 CHROMAT_FILE:
MSMg01no418_h02.g1 PHD_FILE: MSMg01no418_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:38 2005
(479 letters)
>mm_chr13_80100740_80101618
Length = 879
Score = 857 bits (443), Expect = 0.0
Identities = 469/479 (97%), Gaps = 3/479 (0%)
Strand = Plus / Plus
Query: 1 acctaagtttgagctttcttggaatttctttgttgtacagtgttttcagaaattaatcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctaagtttgagctttcttggaatttctttgttgtacagtgttttcagaaattaatcac 260
Query: 61 catctgctaggtatgttttaaaatactattttattttatctataagtcagccaatttatt 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 catctgctaggtatgttttaaaatattattttattttatctataagtcagccaatttatt 320
Query: 121 atgtggaatcataatacttctctggagactcagatttttcaaaacctactttaataaggg 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtggaatcata---cttctctggagactcagatttttcaaaacctactttaataaggg 377
Query: 181 ttctcaagggtgggaagaaaagagggtgaggatatggggatgtgaactacttagaagtag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttctcaagggtgggaagaaaagagggtgaggatatggggatgtgaactacttagaagtag 437
Query: 241 ttctttgttgtgattgcaatctctgttgtcaagatacctgtagtccagttcaaatttcat 300
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttctttggggtgattccaatctctgttgtcaagatacctgtagtccagttcaaatttcat 497
Query: 301 caaatgtgaatcagcagcatccacgcaatccagaagaaacagtcaggcctctgcctaatt 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 498 caaatgtgaatcagcagcatccacacaatccagaagaaacagtcaggcctctgcctaatt 557
Query: 361 ggtacaagtcagcagaaaggaaaagggggctaatatcagaagttagctgcttttcctctc 420
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 558 ggtacaagtcagcagaaaggaaaaaggggctaaaatcagaagttagctgcttttcctctc 617
Query: 421 tcagtgaagtgaagatcagcaaggatgcgggaccaatgaagtattgcatggctaactgc 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tcagtgaagtgaagatcagcaaggatgcgggaccaatgaagtattgcatggctaactgc 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
