BAC Information

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BAC

Clone NameMSMg01-419D16
Chromosome13 (Build37)
Map Location 80,937,453 - 81,112,013
singlet/doubletdoublet
Overlap geneArrdc3, LOC666964, LOC100043074
Upstream geneLOC666925, LOC382780, EG666933
Downstream geneLOC218368, LOC666979, EG666984, Gpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419D16.T7 (MSMg01no419_d16.b1)MSMg01-419D16.TJ (MSMg01no419_d16.g1)
ACCAG514380AG514381
length740755
length of high quality
(start - end)		192 (321 - 512)480 (67 - 546)
definitionCHROMAT_FILE: MSMg01no419_d16.b1 PHD_FILE: MSMg01no419_d16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:40 2005CHROMAT_FILE: MSMg01no419_d16.g1 PHD_FILE: MSMg01no419_d16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,937,453 - 80,937,644)(81,111,534 - 81,112,013)
sequence
NTTCTAAAATTGGGCGCGATAGAAACCCAAATTTCGNAAAGAGCGGAGAT
CNCTTTTTATTCTACAAAGAGAAGAAGGAATGAAAGGGGAAACGAAAAAA
CCCTTTTCTCCTCCCATACTTTTGAAAACGGCGTGCATCTCAGCAATAAA
TAAGTCTAAATATAACAATGGGATTCTCTATATGAAACCCATAGATACAC
AAACACACCTCTGTGCCTGAGAAAGAATCACTAATGGAAAAATAATTTAA
TGGTGGAAGAAGGAAGCTCATTGGTAGCATGCTTAAATAGAATGCATGAT
AGACTAAGCTTATNCTCGTATTAACTATGGCTTGAACTTGATCTTCTACA
TAAGCACTTGTCTTGAATAATTAGTTCCCTGCTGAGGATGCCATTTTGAG
GAGGTCCTACAAATGTTGCAATGCGGAATACAAATGGCGAAATAGGTCAC
TAGTAGTGGGCCTTTGAATGTTATATATGTGACATGTGATTCCTGCGTCA
CCATCCATGTATCCTGGTTCACCAGAATAGAATATTCTCTGAACATGTTG
CTGCCACCATGAAGTGAACAGCGCCCCCATGTCCTTCCCTCTCTGAATGT
GGACTTTTAAAATGTTAAAAAAGGGCAAATTTGCGCGAACCCGACTTCCC
TAAAAATTTCCCTAAAGACGCCAAAGAATCGGTTTTTTTTAAAAGGACGC
TATTTTGTTATACCGCCCCTTTTGTTTGGGGTGTGGGTTT

GGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAGAGGTAATGGCAATTACTTTTATTTTTCTCTT
TATTTCTTTTTGGTTTTGTTGTTGCTGTTGTTGTTTTGTTTAGAGACAGG
GTCTCCCTATGTTGCCCTGACTGTCCTGGAATCGACTCTATGGACTAGGC
TGGCCTTAATTTTAGATACCTGAGAGCTTCTATCTCCCAAGTGATTAATA
GTATGTGCCAATAAGCCCAGCTTTCTTTTTCCTAATAAATACAAGGTTTG
TTGTCAGTTTTGTCTATTAAATAAGGTCAGTTTTACTGGTCTAACATTTA
TGTTGAATGAGTTACTGGCATACCTTACTCATTAGAATGCTAACAGCTGG
TCTAAGAGACAAAATTCAGAGCATCTCAAATGCACTCAACTAAATGAAAG
AAGCCAACTCAAAAGGTTTCTTATGCCTGATAACATTCACTCAACATTAT
GGAGGAGATGAGTGCAGAAACACAGAGAATAGATGAGAGCTTTCCAAGAG
CCAAAGTGGGCATGGGGCTTGAATAATATAGGAATGCCTCTCTGTTATGA
TTGTGGAGTAGTTGCATGTGTAACTTGGGCAAGAACTAATTGTTAAATTA
TTTTCACACTTCCATATGTAAATCCTTCTGGAGTGGTGGGCCTTCCTGTT
TTTCCCTGTGAGTTCCCGAAATGGTTACCCAAAAAATTGGTCCTTTATAA
ACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_d16.b1 MSMg01no419_d16.b1 CHROMAT_FILE:
MSMg01no419_d16.b1 PHD_FILE: MSMg01no419_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:40 2005
         (192 letters)



>mm_chr13_80937253_80937844
          Length = 592

 Score =  325 bits (168), Expect = 1e-93
 Identities = 186/192 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaactatggcttgaacttgatcttctacataagcacttgtcttgaataattagttccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaactatggcttgaacttgatcttctacataagcacttgtcttgaataattagttccct 260

                                                                       
Query: 61  gctgaggatgccattttgaggaggtcctacaaatgttgcaatgcggaatacaaatggcga 120
           |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct: 261 gctgaggatgccattttgaggaggtcctgcaaatgttgcaatgtggaatacaaatggcaa 320

                                                                       
Query: 121 aataggtcactagtagtgggcctttgaatgttatatatgtgacatgtgattcctgcgtca 180
           ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 321 aataggtcactcgtagtgggcctttgaatgttatatgtgtgacatgtgattcctgcatca 380

                       
Query: 181 ccatccatgtat 192
           ||||||||||||
Sbjct: 381 ccatccatgtat 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no419_d16.g1 MSMg01no419_d16.g1 CHROMAT_FILE:
MSMg01no419_d16.g1 PHD_FILE: MSMg01no419_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:40 2005
         (480 letters)



>mm_chr13_81111252_81112131
          Length = 880

 Score =  905 bits (468), Expect = 0.0
 Identities = 477/480 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaggtaatggcaattacttttatttttctctttatttctttttggttttgttgttgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 aagaggtaatggcaattacttttatttttctctttatttctttttggttttgttgttgct 703

                                                                       
Query: 61  gttgttgttttgtttagagacagggtctccctatgttgccctgactgtcctggaatcgac 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 702 gttgttgttttgtttagagacagggtctccctatgttgccctgactgtcctggaattgac 643

                                                                       
Query: 121 tctatggactaggctggccttaattttagatacctgagagcttctatctcccaagtgatt 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tctatggactaggctggcctgaattttagatacctgagagcttctatctcccaagtgatt 583

                                                                       
Query: 181 aatagtatgtgccaataagcccagctttctttttcctaataaatacaaggtttgttgtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aatagtatgtgccaataagcccagctttctttttcctaataaatacaaggtttgttgtca 523

                                                                       
Query: 241 gttttgtctattaaataaggtcagttttactggtctaacatttatgttgaatgagttact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gttttgtctattaaataaggtcagttttactggtctaacatttatgttgaatgagttact 463

                                                                       
Query: 301 ggcataccttactcattagaatgctaacagctggtctaagagacaaaattcagagcatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcataccttactcattagaatgctaacagctggtctaagagacaaaattcagagcatct 403

                                                                       
Query: 361 caaatgcactcaactaaatgaaagaagccaactcaaaaggtttcttatgcctgataacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 caaatgcactcaactaaatgaaagaagccaactcaaaaggtttcttatgcctgataacat 343

                                                                       
Query: 421 tcactcaacattatggaggagatgagtgcagaaacacagagaatagatgagagctttcca 480
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tcactcaacatcatggaggagatgagtgcagaaacacagagaatagatgagagctttcca 283


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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