BAC Information

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BAC

Clone NameMSMg01-419E11
Chromosome13 (Build37)
Map Location 97,963,098 - 97,963,269
singlet/doubletsinglet
Overlap geneHexb
Upstream geneLOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr, LOC100039456, LOC625662, 1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2
Downstream geneEnc1, LOC667676, LOC100039691, LOC100039704, EG328314, LOC100039526, LOC100039740, Rgnef
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419E11.T7 (MSMg01no419_e11.b1)MSMg01-419E11.TJ (MSMg01no419_e11.g1)
ACCAG514418AG514419
length740762
length of high quality
(start - end)
283 (175 - 457)242 (69 - 310)
definitionCHROMAT_FILE: MSMg01no419_e11.b1 PHD_FILE: MSMg01no419_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:45 2005CHROMAT_FILE: MSMg01no419_e11.g1 PHD_FILE: MSMg01no419_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCTTTCAAAATTTGGGGGGCGAAAAAAAGTTTATTCTCCAAAGACGG
GGGAANNNNNATTTCCTCCTTTCTGGGAATTGGGGAAACCGGAAGGCAAC
AGATACCTTTATTTGTCACCCGAACTCCACTGGAATTCAACTAAAACCCA
AAGGACGGGGCACACCGGTAAGGAATTTTTTTTTCTTAAATCCTTTGTAA
TGGGAAGACCCACACTGATCTAGATCTGTGAGGTAGGAAGATACGCCTTT
AATCCAGATCTTTTGAGCCATTGAGATACATCTTTAATCTGGGCCACACC
TTCAACTGGCAGCCTATATTTAAGGACCTGGAAGAAGGAAGCGCTTGCTC
AATCTCTCTCTCTCTCCCCCCTCCCCCTCCTCCTTCCCCTCCCCTCCCCC
TTTCCCTCTCCCTGCTAGCTCTTGCTACTAAGTCCATTCCTTCACTGGCA
TTAGAACAGTGGTTCTCATCCCTCCTAATGCTGTGACCCTTTGACCCAGT
TCCTCACTATGTGGTGACCCCAACCATAAAATTATTTCCCACCGCTACTT
TATAACTGCAATTTCTGCCACCGGTATGAACCCCAACATACAAATTTCGG
GAGAAAAAATTTTGTTCCGCTTTTGCCACCCCCAGGTTTTAAAATACCGC
CCCAGAACCCACTTCTTTTATATCCCAAATACCCATTTGATAAACCACCC
CTCCGCCCCGAACATTCCCGAATTCATTTATCATCCGCCC
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTAATTTCAAAAGGAAATTCTTAGGTTTGGCAG
TGACTCTGCTTGTGTCCACTGGAAGAGAAGGAAGATGGCTTTGACTTTAC
AGCCATCCCCTTCTGTGTGTGTCTGCACTGTGGATACCAACCACTGCTTT
CGAGAGTCTCCATATAGAATCCAGTAATTAAAAGACATCTCAGTCTTTTC
TGGAGATGCTCACCTAGTTCTAGTTGTTAGTTCTTCTCCTGGGCATTGAC
ATACACAATCGTGCAATTAATAAAAAAAACTACGGGCGAGTTCTGGGCTG
TTGATGTGTACCTGCACCCTCTCCCTCTACACCCTCCTTCTTTGGCCCGA
CTCAGCAGCTTGCCAGTCTGTGTCTGGCAAACTTCCATCTGCTCAGCCGG
TCCTCTGCCAATGGACGGCAAGCTCATTTTGTTTAAGTCTTCACTGCAAG
TAAATGGCTTTGGTATATGTGGCTACCTCTCCTAAGGAGAACTTGGCTCC
CTTCTAGCTCTTCTGGCACCCGGGTCCTTCTTTTTATACATGGCTTTGGG
GGTCCTGGTTTTTCAATCTGTGATCGTGCCCCATTTCACAAAACCTTTTT
TTTTTTTTTTTTTCTTCTCCTCCTTTACCCCACTTTCATTCTTTATCCCT
ATTTCTCCACTCTCTTCCCTCTTTCTCGCTTTTTCAGCTCTTCTCTTCTG
TCTCTCTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_e11.g1 MSMg01no419_e11.g1 CHROMAT_FILE:
MSMg01no419_e11.g1 PHD_FILE: MSMg01no419_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:45 2005
         (242 letters)



>mm_chr13_97962898_97963535
          Length = 638

 Score =  306 bits (158), Expect = 1e-87
 Identities = 170/176 (96%), Gaps = 4/176 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatttcaaaaggaaattcttaggtttggcagtgactctgcttgtgtccactggaagaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 201 taatttcaaaaggaaattcttaggtttggcagtgactctgcttgtgtgtactggaagaga 260

                                                                       
Query: 61  aggaagatggctttgactttacagccatccccttctgtgtgtgtctgcactgtggatacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaagatggctttgactttacagccatccccttctgtgtgtgtctgcactgtggatacc 320

                                                                   
Query: 121 aaccactgctttcgagagtctccatatagaatccagtaattaaaagacatctcagt 176
           |    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 a----ctgctttcgagagtctccatatagaatccagtaattaaaagacatctcagt 372


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 638
Length adjustment: 9
Effective length of query: 233
Effective length of database: 629
Effective search space:   146557
Effective search space used:   146557
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)