BAC Information

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BAC

Clone NameMSMg01-419K12
Chromosome13 (Build37)
Map Location 10,484,590 - 10,484,874
singlet/doubletsinglet
Overlap genenone
Upstream geneDip2c, LOC666986, Zmynd11, Chrm3, LOC100039604
Downstream geneLOC100039648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419K12.T7 (MSMg01no419_k12.b1)MSMg01-419K12.TJ (MSMg01no419_k12.g1)
ACCAG514706AG514707
length758763
length of high quality
(start - end)
285 (201 - 485)234 (117 - 350)
definitionCHROMAT_FILE: MSMg01no419_k12.b1 PHD_FILE: MSMg01no419_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:16 2005CHROMAT_FILE: MSMg01no419_k12.g1 PHD_FILE: MSMg01no419_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTTTAATTTGTGGGGCCGAAAAAGACCCACACTACATCACCGCGNGA
ANNNNGTGTTTCTCCCAAAAGAGCNGAGAAAAACNCGGGAAAACGGGGAT
CCTCTTGCGACACTTTTTTCTCTATTCTCAGACCCATAGAGTCAGAATAT
ATAATCTTTAAAAATGAGATTCTCTTACACATTAAGTGAATTTTACTTGA
ACATTTTCTTGAAAAGGGGATTTATATAAAACAGTTAAGGAAAAACAAGA
GATTCCAGGCTGCTTGATCCACTGAAAACTTCTATGCACAAACCCATGCA
TACTTAACATATTTATTTTTGAGTGGTACCTTCCTGATATCAGGAGACCT
TCTCATTCCTTTTGGAATTTTGAAGAGTGATATGACTTTTCACTTTATTT
TTACCTATGTGCATTGTATGTGTATGCATGAATATATACACAAGTGTGCA
AGTAGCCTCAGAGGTCTGAGGAGGGAGTCAGATCCCCTAGAGCTAAAGTT
ACACATGGTCATGAGCTGTCCAGCATGTGTGCTGAGAATGCAAAGAATCT
TCTACCAGAAACTCTTAATGGATGATCCATCCCCCCCCAGACCTTGGTTT
TGGATAAAGAAACCGTTTCTGGCTTAGAAAAAGCATCCCCCCTATGTTTA
AAAACAATAATTCCCCCTGGAAAAGGAAGGAAGACCTCGTTTTCCTGTGG
CTTCTTTGTCACAAATTTCCCCAAAAAAGGCCTGGGTGTGTTCTCCCTCC
ACCCCCCC
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATCATAAGGCAAATGGCATTTACCTTTTAAAAGT
AGAGGAGGTGGAGCCCGCACATGTGTAAAACGGCATGCTGAGCAAGCCTG
ATTACCTGAGTTCAGTTCCCAGAACCCATGGTGGGAGGAGGAAACCAATT
CCTGAAAGTTGTCCTCTGAACTCATGTGTTCTATATAGTGCATGTTCTCC
ACTCTACTACCTCTCTGTCTCTCTGTCTGCCTCTATCTCTCTGTCTGTGT
CTCTGTCTCTCCNCTCNCTCTCTTTCCACACACACACACACACACACACA
TTTTTTCACCCACACACACACATTATTATCAATGATAAATTCGAGTCATT
TTAACCCCCCAAATTTTGGTACATGCCATCAACCCCAGTACTTGGGGGTA
GAGACATGGGGTCTGCTCTCCAAGCACAGTCTTTGGTACATAGAGAGCTG
GAAGGCAGCCTAGGCTTATGCGAGATTTTTGTCTCCCAACATACTATTTA
CAGAATTCTTCCTCCTCATAGCAAGGTCCTCGCAGTATAGACGACTTTCT
ATTTGTATGGTCTAATTCTTCCCCTTTTTAGATTTAATGCAGACCCACCT
TTTTTTTTTTTTTTTCAANCCACGAGGGCCCCTGCATCTGCCCTTATTCT
ATCTTTTCCTCTTTTCTTTTTTTTAGGTGTATCTGTAATTGCCGCATTTT
TTTTCTCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_k12.b1 MSMg01no419_k12.b1 CHROMAT_FILE:
MSMg01no419_k12.b1 PHD_FILE: MSMg01no419_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:16 2005
         (285 letters)



>mm_chr13_10484390_10485074
          Length = 685

 Score =  482 bits (249), Expect = e-140
 Identities = 276/289 (95%), Gaps = 8/289 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   acattttcttgaaaaggggatttatataaaacagttaaggaaaaacaagagattccaggc 60
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acattttcttgaaaagtgaatttatataaaacagttaaggaaaaacaagagattccaggc 260

                                                                       
Query: 61  tgcttgatccactgaaaacttctatgcacaaacccatgcatacttaacatattta----t 116
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||    |
Sbjct: 261 tgcttgatccactgaaaacttctatgcacaaacccatgcatacttaacatatttagaact 320

                                                                       
Query: 117 ttttgagtggtaccttcctgatatcaggagaccttctcattccttttggaattttgaaga 176
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ----gagtggtaccttcctgatatcaggagaccttctcattccttttggaattttgaaga 376

                                                                       
Query: 177 gtgatatgacttttcactttatttttacctatgtgcattgtatgtgtatgcatgaatata 236
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 377 gtgatatgacttttcactttatttttacctatgtgtattgtatgtgtatgcatgaatata 436

                                                            
Query: 237 tacacaagtgtgcaagtagcctcagaggtctgaggagggagtcagatcc 285
           | |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 437 tgcacaagtgtgcaagtagcctcagaggcctgaggagggagtcagatcc 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)