BAC Information

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BAC

Clone NameMSMg01-419O11
Chromosome13 (Build37)
Map Location 96,366,723 - 96,367,160
singlet/doubletsinglet
Overlap genenone
Upstream geneTbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1
Downstream geneF2r, Iqgap2, F2rl2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419O11.T7 (MSMg01no419_o11.b1)MSMg01-419O11.TJ (MSMg01no419_o11.g1)
ACCAG514895AG514896
length724761
length of high quality
(start - end)
119 (193 - 311)438 (69 - 506)
definitionCHROMAT_FILE: MSMg01no419_o11.b1 PHD_FILE: MSMg01no419_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:35 2005CHROMAT_FILE: MSMg01no419_o11.g1 PHD_FILE: MSMg01no419_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTATTACTATATGTGGCTTGCTAGACGACTACTTTTCGAAGAGAGCGN
GGNAANCATTGTCGCCAACAGAGTACTACCAGGGGAGGAGAGTCATCGAA
ATCGTAGAATGGATATTGCTAAGTAAAATAAAGCTGTCCATAAAAGCTAC
ATACTTCATAACCTCAAATAGATGTCATTTTGGAAAATAATAGAGATAAC
AGGACCTCACAAGTAAGTACTCTGCCACCCAGCCCCACCCCCTCTTCACA
GAAACAGTGTCACCAAGCCGCCTAGGCTGGCCTCAAACTTGGCATCCTTT
TGCCTTAGCCTCTTGTTTTTCTGGGAGTACAGACCTGCGTCACTAACATT
GCTGGCTTAACGTTTGAAGATATGAAAAATAACTTTAAATACTTATGTTA
TGACATAAAGGCCAGCTTTAAACCTTAGTCCTACAGAAAGTTCCTTGAAG
ACTGACAAACGCCCGCTTATGGTTGGCCATCTGAGTGATGCTCCTAACAA
CAAAGAGCATGGGGTAATTTGAGTGCTGACCACCAAGAAGTTTATCTGCG
GCCCGACGGATATATTCTGGAACTGATGCCTTCCCGAGTCAATTTCTCCA
TCTTCCCTCCCTACATTTGTTGTGCTTGCCGCTAAACTTTTGCCCCGTTC
TTTTTCCACTTTTCACTATTCTTATTGTTCGTTCTCCCCCCTACGTTTTA
CCCTCTTTATTTATTTTTCCACCN
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTTTATAGGCCAGGCTGACTTCAGACTCACA
GAGATCCGCCTGCTTCTGCCTCCCGAGTGCTGAGATTAAAGGTGTGTGCC
ACCACTGCCTGGCTAGGATTCATACTTTTGATCCCTCAGGTCGGCCGGCC
TCCCAGGCAGAGGGATTGAAGGTAGACACCACCACACCCACTACACTGGG
GCAGTTTGTAAAGCAGCAGCAACCTGTGCTTAGCTCGGCTTAATTCATGT
GTTTGAGGCAATATCTATCTTCCTGAGAGTTCCCTCCCTTGCAGAGGTTT
AGTCTGTTGCTATGTATTGTAATGCTAAGCGCAGGCCCCCAAGGCCTGGT
TGCCACAGAGATGAGAGAGTCTGCACGTAGACACATAAGAGTGATGCTAT
ATGACCTTGCCCCCAAGTTACTTCTGATTGGTGAATAACGATGCTGGGCA
GAAGACGCATANAAGGTGGAGGTGGNNGGTGGNNANTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNTNNNNTNTNTTTTNNN
TTTNNNTTTTTTTTTTTNNTTTTNTTTTTTTTTTTNTTTTTTNNTTTTTT
TTTTTTTTTTTTTNTTTNNNTNNNTTTTTTTTTTTTTTNTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTNTTNTTTTTTTTCCNTTT
NTTTNTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_o11.g1 MSMg01no419_o11.g1 CHROMAT_FILE:
MSMg01no419_o11.g1 PHD_FILE: MSMg01no419_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:35 2005
         (438 letters)



>mm_chr13_96366558_96367395
          Length = 838

 Score =  839 bits (434), Expect = 0.0
 Identities = 437/438 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttataggccaggctgacttcagactcacagagatccgcctgcttctgcctcccgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tctttataggccaggctgacttcagactcacagagatccgcctgcttctgcctcccgagt 544

                                                                       
Query: 61  gctgagattaaaggtgtgtgccaccactgcctggctaggattcatacttttgatccctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gctgagattaaaggtgtgtgccaccactgcctggctaggattcatacttttgatccctca 484

                                                                       
Query: 121 ggtcggccggcctcccaggcagagggattgaaggtagacaccaccacacccactacactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ggtcggccggcctcccaggcagagggattgaaggtagacaccaccacacccactacactg 424

                                                                       
Query: 181 gggcagtttgtaaagcagcagcaacctgtgcttagctcggcttaattcatgtgtttgagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gggcagtttgtaaagcagcagcaacctgtgcttagctcggcttaattcatgtgtttgagg 364

                                                                       
Query: 241 caatatctatcttcctgagagttccctcccttgcagaggtttagtctgttgctatgtatt 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 caatacctatcttcctgagagttccctcccttgcagaggtttagtctgttgctatgtatt 304

                                                                       
Query: 301 gtaatgctaagcgcaggcccccaaggcctggttgccacagagatgagagagtctgcacgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gtaatgctaagcgcaggcccccaaggcctggttgccacagagatgagagagtctgcacgt 244

                                                                       
Query: 361 agacacataagagtgatgctatatgaccttgcccccaagttacttctgattggtgaataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agacacataagagtgatgctatatgaccttgcccccaagttacttctgattggtgaataa 184

                             
Query: 421 cgatgctgggcagaagac 438
           ||||||||||||||||||
Sbjct: 183 cgatgctgggcagaagac 166


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)