BAC Information

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BAC

Clone NameMSMg01-420B21
Chromosome13 (Build37)
Map Location 99,777,665 - 99,973,558
singlet/doubletdoublet
Overlap geneLOC100039967, LOC100039797, Zfp366
Upstream geneRgnef, LOC667703, Utp15, Ankra2, EG667718, Btf3, Foxd1, LOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik
Downstream genePtcd2, Mrps27, Mtap1b, Cartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420B21.T7 (MSMg01no420_b21.b1)MSMg01-420B21.TJ (MSMg01no420_b21.g1)
ACCAG515058AG515059
length756780
length of high quality
(start - end)		360 (128 - 487)480 (63 - 542)
definitionCHROMAT_FILE: MSMg01no420_b21.b1 PHD_FILE: MSMg01no420_b21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:51 2005CHROMAT_FILE: MSMg01no420_b21.g1 PHD_FILE: MSMg01no420_b21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,973,199 - 99,973,558)(99,777,665 - 99,778,144)
sequence
NNNTTTCATAAATTGCGGGCGCTATACGAATCCTATATTTCACAAATGCG
CGGAATCAAGGCTTTTCCCGGCTAGGCTTTAAAAAAAAAAATCTCTCAGA
GATAACCTACAAGCCCACCTAGTCTGGCCCCCATATAGTCTTAATCCCCA
TCCCTAAATCTACTCAGGGCATCGCCAATCTCAGGTTCCCCTCCCCATTC
TGTTCCCACCCCTCAGAACCATTGTAACGCCCTTCCCCCTGTCTCAGCAC
CATCCCCACCTCACCAGCTTCCTTGGCTGGGATGACACTCAGGTGCTTAT
GTCAGAGGTTGGTTCGGTGTTTTTTATATTCAAAGGCTAAATTCTGGACC
CCAAGATCTGGTTGCTCCAAGGCAAGCAGATCCTCATGGGTACCAGCCTT
GGTTGTGTGAACCTTGCTCCCTGAGTTAATTGGTCAATCAAAGGTGAAAG
CCTATGATTGGGAGATAGATAGAAGTAAGCATGTTTTCAGTTACCTGGCT
GAGGGTGACAGAATGAGAGAGGAGGGGAAGACAGGAAGAAGCAACCATGA
GAGAAGATGGACCGTGAGTACATGAAGCTGTTTCTCCTGTGGGTCAGGAA
AACAGCAAGTACCAAGGGAAACCCGACTGAAATTTAAGTTAAAAAAGCTA
CAAAACTGGTCCAACCTAGGGTTAAAGGTTGGAAGGTAAAAAACCGGAAT
TGGGGGCTTTTTATGGGGAAGAAAGTTTGGGAACAAACCCAAACCCCCCT
CCCCTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCATAGCCCGTGTCAGAGCACACACAGGCAAGTTCCTGT
CTCTAAGGTATACTCAGCACGGGGCCTGACATGAGGAGGCATCTCTCTGC
ATAACCCTCACTGGGCTGTGGAGATGGACGGAGAAAGAAATAAAGGTGCC
CCCGAGAGGGAACATACTGTGCCTGGAGCACCACAATAAGGTACTTCGGG
AGACAGTTGTTAAGGTCTCAGATTATTCACCCCACCCCCACCCACTCCCC
AACAGAATGGTAACCTTTTGCATGTATGCATTTGGTCGAGGAAAGGGAGT
CTGGTGGCTTGTATCCCGGAGTCTATGAGGACATGAGGGAAAAATTTGTA
CCCCTGTTGTTTTGGGTACTTTGCAGAGCTATGATTTCTTTAAAATGCAT
GGATCCTGTTGTTCAGGAAAAGGAGCAGATGGGAAATGAGCCTACCCTTG
GGCTCAGAGGCTGCTATGGATCTGGACGCAGGTAGTCAGGCAACAGGAAA
CAAATACAACAAAACACTGGGACGCAGGGAAGTATTTTTGGCCTCTTGGG
CACCTGTGGCAGGACCTGAAGGAAGGTGCTCTCAAGGTTTCTGGCCGGGG
CAGCCTTACAATGGGTTTGGAAAAAAGGCTTAACCGGTAATGATGGGTTC
CCCCCCCTTGGATTGTGAGCTTGTAAAAAATTCTCCTATGCCAAAAAGGG
GGGGGGGAGAACTCTTTTCCTCACAGGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_b21.b1 MSMg01no420_b21.b1 CHROMAT_FILE:
MSMg01no420_b21.b1 PHD_FILE: MSMg01no420_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:51 2005
         (360 letters)



>mm_chr13_99973182_99973941
          Length = 760

 Score =  658 bits (340), Expect = 0.0
 Identities = 355/360 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccccatatagtcttaatccccatccctaaatctactcagggcatcgccaatctcaggtt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 377 cccccatatagtcttaatccccatccctaaatccactcagggcatcgccaatctcaggtt 318

                                                                       
Query: 61  cccctccccattctgttcccacccctcagaaccattgtaacgcccttccccctgtctcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cccctccccattctgttcccacccctcagaaccattgtaacgcccttccccctgtctcag 258

                                                                       
Query: 121 caccatccccacctcaccagcttccttggctgggatgacactcaggtgcttatgtcagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 caccatccccacctcaccagcttccttggctgggatgacactcaggtgcttatgtcagag 198

                                                                       
Query: 181 gttggttcggtgttttttatattcaaaggctaaattctggaccccaagatctggttgctc 240
           ||||||| |||| |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gttggtttggtgctgcttatattcaaaggctaaattctggaccccaagatctggttgctc 138

                                                                       
Query: 241 caaggcaagcagatcctcatgggtaccagccttggttgtgtgaaccttgctccctgagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 caaggcaagcagatcctcatgggtaccagccttggttgtgtgaaccttgctccctgagtt 78

                                                                       
Query: 301 aattggtcaatcaaaggtgaaagcctatgattgggagatagatagaagtaagcatgtttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  aattggtcaatcaaaggtgaaagcctatgattgggagatagatagaagtaagcatgtttt 18


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no420_b21.g1 MSMg01no420_b21.g1 CHROMAT_FILE:
MSMg01no420_b21.g1 PHD_FILE: MSMg01no420_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:51 2005
         (480 letters)



>mm_chr13_99777465_99778344
          Length = 880

 Score =  920 bits (476), Expect = 0.0
 Identities = 479/480 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catagcccgtgtcagagcacacacaggcaagttcctgtctctaaggtatactcagcacgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagcccgtgtcagagcacacacaggcaagttcctgtctctaaggtatactcagcacgg 260

                                                                       
Query: 61  ggcctgacatgaggaggcatctctctgcataaccctcactgggctgtggagatggacgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcctgacatgaggaggcatctctctgcataaccctcactgggctgtggagatggacgga 320

                                                                       
Query: 121 gaaagaaataaaggtgcccccgagagggaacatactgtgcctggagcaccacaataaggt 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaagaaataaagatgcccccgagagggaacatactgtgcctggagcaccacaataaggt 380

                                                                       
Query: 181 acttcgggagacagttgttaaggtctcagattattcaccccacccccacccactccccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttcgggagacagttgttaaggtctcagattattcaccccacccccacccactccccaa 440

                                                                       
Query: 241 cagaatggtaaccttttgcatgtatgcatttggtcgaggaaagggagtctggtggcttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagaatggtaaccttttgcatgtatgcatttggtcgaggaaagggagtctggtggcttgt 500

                                                                       
Query: 301 atcccggagtctatgaggacatgagggaaaaatttgtacccctgttgttttgggtacttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcccggagtctatgaggacatgagggaaaaatttgtacccctgttgttttgggtacttt 560

                                                                       
Query: 361 gcagagctatgatttctttaaaatgcatggatcctgttgttcaggaaaaggagcagatgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcagagctatgatttctttaaaatgcatggatcctgttgttcaggaaaaggagcagatgg 620

                                                                       
Query: 421 gaaatgagcctacccttgggctcagaggctgctatggatctggacgcaggtagtcaggca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaatgagcctacccttgggctcagaggctgctatggatctggacgcaggtagtcaggca 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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