BAC Information

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BAC

Clone NameMSMg01-420E01
Chromosome13 (Build37)
Map Location 102,392,999 - 102,393,253
singlet/doubletsinglet
Overlap genenone
Upstream geneRad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937, 4933416M06Rik, LOC100039971, LOC100039983
Downstream genePik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420E01.T7 (MSMg01no420_e01.b1)MSMg01-420E01.TJ (MSMg01no420_e01.g1)
ACCAG515162AG515163
length767719
length of high quality
(start - end)
243 (62 - 304)591 (74 - 664)
definitionCHROMAT_FILE: MSMg01no420_e01.b1 PHD_FILE: MSMg01no420_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:02 2005CHROMAT_FILE: MSMg01no420_e01.g1 PHD_FILE: MSMg01no420_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCGCTAAACGACNCACAAATTCCGACCCGCGGGAANNCAGNNCAGTTT
TCCACACTAGGGTTGTTTGGGAGTTTTCTGTTTGTTGGTTGGTTGGTTGG
TTGTTTGCCCGGTTTAATGGATTTTATTACTTTTTTGTTCTAGAAAAGAC
CCAAGCTGGTCTTGACCTCGTGATACTATTTCCTCTTGCTCCCAAGTACT
ATAATTGTTCAAGTGTACTACCATACTTGGTAACCACTCGTTTCATAGCC
CTATATACGGCTAATTATGAATGAGAGGGTACAGGGAATATCAAGGTCTT
ATTAGTTTTTTTTTTCCCTGACAGTCTCGCCCTGAGCAGATCATTCAGTG
GCTCTTTGTACTGTTTCATCATCCAGCCCACTGGACATCCCCCTGTGGAC
AGCCATTATGTGAACTGTTTGACAACTGAGATGCCTCTTTGGAATGGGAA
GGATCTTGCTAACTCCTCTATGGTGATGATATTGAGATCACAGATGAGGA
GCTGAGATTCACGGGAGCTTGGAATGGCATATCAAGGTCCTGAACTTCAG
CATGAAACAGCATGCACCCTCCTCCATGCTATTTCACCTTCTGCTGCGGA
CATTTTCTTCCAGGGTTTTCTTGGAATCCAAAATTTCACCCTGAGCTTTC
CTTTCCTTTTCCTGCCAGGGCTCTTCAGCGAACAGCATAATTAATTTCTT
CCATTAGGCCGGGCATTTTCCTTCCCCTAAACACCGGTTAATCCCTTTCC
ACAAATGGGACTCAATG
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTGATCCTTTTGAACTTGAGCTTTGT
ACAAGGAGATAAGAATGGAGTGGTTTGCATTGTTCTCCATGCTAACCTCC
AGTTGAGCCAGCACAATTTGTTGAAAATGCTATCACTGGATGATTTTAGC
TCCTTTGTTAAAGATCAAGTGACCAGAGATATACGGGTTCATTTCTGGGT
CTTCAATTCTATTCCATTGATCTACCTGCCTGTCACTGTACCAGTACCAT
GCTGTTTTTATCACTATTGCTCTGTAGTACAGCTTGAGGTCAGGCATGGT
GATTCTCCCAGATGTTCTTTTATTGTTGAGAAGAGTTTTCGCTATTCTAG
ATTTTTTGTTATTTCAAATGAATTAGCAAATTGCTCCTTCTTACTCTATG
AAGAATTGATTTGGAATTTTTTCATGGGAATTGCATTGAATCTGTAGATT
GCTTTCAGCAAGATGGCCATTTTTACTATATTAATCCTGCCAATCCATGA
GCATGGGAGATCTTTCCCTCTTCTGAGATCTTCAATTTCTTTCTTCAGAG
ACTTGAAGTTCTTGTCATACAGATCTTTCACTTGCTTGGTTAGAGTCACA
CCAGGATATTTTTTATTATTTGTGACTATTGTGAAAGGTGCCGTTTTACT
AATTTCTTTTTCCGCCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_e01.b1 MSMg01no420_e01.b1 CHROMAT_FILE:
MSMg01no420_e01.b1 PHD_FILE: MSMg01no420_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:02 2005
         (243 letters)



>mm_chr13_102392811_102393453
          Length = 643

 Score =  369 bits (191), Expect = e-107
 Identities = 234/255 (91%), Gaps = 12/255 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgtttgggagttttctgtttgttggttggttggttggtt---------gt---ttgcc 48
           |||||||||||||||||||||||||||||||||||||||||         ||   |||  
Sbjct: 189 gttgtttgggagttttctgtttgttggttggttggttggttggttggttggttggttggt 248

                                                                       
Query: 49  cggtttaatggattttattacttttttgttctagaaaagacccaagctggtcttgacctc 108
            ||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||
Sbjct: 249 tggtttaatggattttattatttttttgtactagaaatgacccaagctggtcttgacctc 308

                                                                       
Query: 109 gtgatactatttcctcttgctcccaagtactataattgttcaagtgtactaccatacttg 168
            |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 309 atgatgctatttcctcttgctcccaagtactataattgttcaagtatactaccatacttg 368

                                                                       
Query: 169 gtaaccactcgtttcatagccctatatacggctaattatgaatgagagggtacagggaat 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gtaaccactcgtttcatagccctatatacggctaattatgaatgagagggtacagggaat 428

                          
Query: 229 atcaaggtcttatta 243
           |||||||||||||||
Sbjct: 429 atcaaggtcttatta 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)