BAC Information

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BAC

Clone NameMSMg01-421A09
Chromosome13 (Build37)
Map Location 76,723,243 - 76,723,704
singlet/doubletsinglet
Overlap geneMctp1
Upstream geneLOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276
Downstream geneLOC666603, EG666607, Ankrd32, 2210408I21Rik, LOC631139, LOC675063
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421A09.T7 (MSMg01no421_a09.b1)MSMg01-421A09.TJ (MSMg01no421_a09.g1)
ACCAG515750AG515751
length753764
length of high quality
(start - end)
79 (375 - 453)463 (76 - 538)
definitionCHROMAT_FILE: MSMg01no421_a09.b1 PHD_FILE: MSMg01no421_a09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:02 2005CHROMAT_FILE: MSMg01no421_a09.g1 PHD_FILE: MSMg01no421_a09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATATTTGCGGCGCTAAANGAAGCCTAATTTCGTACTCGGCGGAANCAAN
NNCATTTACANTAACGAGGGNCAANGNCNANAAAAGGGACAANGAAAANG
GNNAGNGGAGNNAACCCNNCAAAGGNAAAGAAGCTGAGACGNCCCCNCGG
NNNTCNANNCNGGGAGACCAAGGGAAANAAACCACAGACTAATAATCTGA
TCTTCAAGGGGGCTGGTGTTTTTGCCACAGGCGTGAAATGAACTTTGTAT
AATCCCTTATAAATGAATTAATAGACCTAAAGAAATCTTGCTGAAGAATA
TTACTTTTACTTTTATTTTTTTGATCAACCNGGAAAANGCACNAACCAGG
GANGGAAATATCAACTCCCCTTTTTTGATTTCAGGTTTTCCAAGAAGTTC
ACTTAGTGGCAAGGATTCAAATGCTTGGGGATTTTTTAGGGAGAAATCAC
AGGGAAGTGAGGCACTGGAGGAAAGGAAGCTTTCATAAGCCATGTTTTCA
AACTGAGTACCACAGGGCTGATAAACTGGAGGAGACATGGAAATCATGCC
TGCAACTTGCTTTCATTGACCCCCTTTGTCAGAAGTGGTTGAGAATCATT
GATATTCAGCTATCAGCACTTGCTGAGAGCTTGCTCCAGAATAACAAGGA
GTGTATTTTTTTTTTTTTAATGTACTTTTTTCATTGTGAATGAGGTCTGC
GGAAAACGAATAGTTCCCCCGTTGCTTCTGTTCCCTCCGGCTTACTTTTC
CTG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACAGAGCTTGCATGGCTGTGTTCATGCCA
CGGATATGTATTACTAATGCTTTCCCATTACTGTAATGACTCAAGAAAAG
GGACACCCGTGCCTGATTTGTGTATCTATACTAAATTAAGATGGGATTAA
AGCTCAGCAGGGAATCTCCAGAGTTTATTTGGGTTTATAACAAATGCACA
TTCAATACAATGCTTGGTACTTATAACAAAGATGTCTGTGAACCCTTCCA
AAAGGATCACACTGCTTCACTGATTCTTGTATTTCACTGGATTACTAACC
AATATTTGGTAAACACCCACAGTCAATAAGTGTGAGAAAATAAATTTTAA
AAATATAAGGGCTTGGGGCTTTCCCAAAAGCTGTTGCCTGTACATGGGAT
ATGTTCTTCTATATGGGCTGCCCTGTCTGGCCCTAGTAGGGAAGGATGTG
CCTAGTCTCACAGAGACTTGATGTGCCAGGGTGGGGGATACCTGGTACAT
ATATCATTGTTGCCTGCTAATGAACAGGGCGTCTACCTTGCAAACAAGTA
CCGACTCTTTTTTGACCTCTTCTATGTGCGGTCTCCTTCCTTAAGTCCAG
CAAAAGGTTCTTATCTCCCATTATTTTCCTTCATCTCCTAACAAACCTGT
TTCCTTCATAAAGGTTTTTTTAACTTATTGCCAAACTGCAACTTGTTTTG
CAAATCATTGGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_a09.g1 MSMg01no421_a09.g1 CHROMAT_FILE:
MSMg01no421_a09.g1 PHD_FILE: MSMg01no421_a09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:02 2005
         (463 letters)



>mm_chr13_76723195_76724056
          Length = 862

 Score =  864 bits (447), Expect = 0.0
 Identities = 459/463 (99%), Gaps = 1/463 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcttgcatggctgtgttcatgccacggatatgtattactaatgctttcccattactgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 agcttgcatggctgtgttcatgccacggatatgtattactaatgctttcccattactgta 451

                                                                       
Query: 61  atgactcaagaaaagggacacccgtgcctgatttgtgtatctatactaaattaagatggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 atgactcaagaaaagggacacccgtgcctgatttgtgtatctatactaaattaagatggg 391

                                                                       
Query: 121 attaaagctcagcagggaatctccagagtttatttgggtttataacaaatgcacattcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 attaaagctcagcagggaatctccagagtttatttgggtttataacaaatgcacattcaa 331

                                                                       
Query: 181 tacaatgcttggtacttataacaaagatgtctgtgaacccttccaaaaggatcacactgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tacaatgcttggtacttataacaaagatgtctgtgaacccttccaaaaggatcacactgc 271

                                                                       
Query: 241 ttcactgattcttgtatttcactggattactaaccaatatttggtaaacacccacagtca 300
           ||||||||  |||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttcactga-ccttggagttcactggattactaaccaatatttggtaaacacccacagtca 212

                                                                       
Query: 301 ataagtgtgagaaaataaattttaaaaatataagggcttggggctttcccaaaagctgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ataagtgtgagaaaataaattttaaaaatataagggcttggggctttcccaaaagctgtt 152

                                                                       
Query: 361 gcctgtacatgggatatgttcttctatatgggctgccctgtctggccctagtagggaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 gcctgtacatgggatatgttcttctatatgggctgccctgtctggccctagtagggaagg 92

                                                      
Query: 421 atgtgcctagtctcacagagacttgatgtgccagggtggggga 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  atgtgcctagtctcacagagacttgatgtgccagggtggggga 49


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 862
Length adjustment: 10
Effective length of query: 453
Effective length of database: 852
Effective search space:   385956
Effective search space used:   385956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)