BAC Information

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BAC

Clone NameMSMg01-421F06
Chromosome13 (Build37)
Map Location 55,378,466 - 55,378,932
singlet/doubletsinglet
Overlap geneNsd1
Upstream geneLOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4
Downstream geneRab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421F06.T7 (MSMg01no421_f06.b1)MSMg01-421F06.TJ (MSMg01no421_f06.g1)
ACCAG515981AG515982
length771787
length of high quality
(start - end)
555 (46 - 600)467 (72 - 538)
definitionCHROMAT_FILE: MSMg01no421_f06.b1 PHD_FILE: MSMg01no421_f06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:27 2005CHROMAT_FILE: MSMg01no421_f06.g1 PHD_FILE: MSMg01no421_f06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGCACTATTGACGCACAGAGAGGATGGGATGGCTCCTGGGACTC
ATTGACTGTCCAGTCTAGCTGACCCACTGAGCTCCAGATTCACTGAGAGA
CTTTGTCCCCAAAAGGTGTCACATGGTGACTAGGGAGACCTCTCCTCAGT
TAGGAACAAAGTTTTTGCCAAGTTCAGTTCTCAACACCCATGCCAGGCAG
CTCACAACCACCTGTGACTGCCACAGAGGATCTGACACCCTCTTCTGGCC
TCTGCAGACACCTGCACATACATGTATATAAACACGCATACTTTAGAACA
AAACAGAAAAACAAACGAACAAACAAAAAAGCAACACAAGGCAGCCTGAA
GAGATGGCTAGGCGGGTAAGAGGTCCAGAGTTCAATTCCCAGCAACTGCC
TGGTGGTTCAAAGCTATCTGTCAGGATCTGATTCCTTCTTCTGGTGTACA
TGAATAAATAAATCTCTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTC
TTTTCTTTTCTTTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTTCTTCTTCCTTTTTTTAAAGGGGGCAAGTGGGTAGTAGTAA
TGCACGCATTTGATCCCAGTATTCACGAGGCAGAAGGAGGAAGATTTCTG
TGAGTTTTAGGCCAGCATGGGTTGCAATATGAGTTCTCAGAACAGCCAAG
GTTTTTATTTAAGAGAATTCC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGGTGAAAGTAGAATTAGAACCAGGGAG
TGAGCATCACAGATGTTGATGCAGAGTGTTTTCTTTCTAATTTGCATAGA
ATGCCCAAGGGGGGCATTGCCTAGGAAACACAGATCTTGGAAGGACAAAT
AAGTAATCAAATAAACTTAAGAATGTTTTCTCTCCCTTAGTGAAACCTTT
AAATGGAACAGCTCAAAAAAAGTTCCAGTGGAACAGCCTCAGAGCAGTTA
GTGGCAGGGCATGAGGCGCCCACTACCCGTCCAATCACAGCAGGGTTAGA
ACTAACATTGCATGCAGTCCGCCCGCGTGATTGGCTGAACATCTGTAAGT
GCTTAATGGTTAGACAAATAGCAGCCCAGAGGGAGGAGGGGGTCAGATGG
AGGAGACATCAATAATACAGATGTGGGACATTATTTTTTCTCTGCAAGGG
AGAACTGCTGATTCACAGGACTGCTGCCAGCCCCAAGGAGATTCTTGAAG
AGGGTGTANAACATGATCCTGGGATGTCTGCATCCAAAAAACTGTAGGTT
GAAAGAGGCGGAGGAGCGGCACTCAAGGAGAATGTGTGGCCAGGACAAAT
AGATTGNCTTATCTTTTGGCGCTGGGGTATTTTATTTAAACACGGGCCTC
TATCTTTCTTAAAAAAACTATTCTGGGTTACATAATTAGCCCCCTATCGT
TCTCCATTGTTTCTCTCACGCTCTTTATGCTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_f06.g1 MSMg01no421_f06.g1 CHROMAT_FILE:
MSMg01no421_f06.g1 PHD_FILE: MSMg01no421_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:28 2005
         (467 letters)



>mm_chr13_55378266_55379132
          Length = 867

 Score =  895 bits (463), Expect = 0.0
 Identities = 466/467 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggtgaaagtagaattagaaccagggagtgagcatcacagatgttgatgcagagtgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggtgaaagtagaattagaaccagggagtgagcatcacagatgttgatgcagagtgttt 260

                                                                       
Query: 61  tctttctaatttgcatagaatgcccaaggggggcattgcctaggaaacacagatcttgga 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 tctttctaatttgcatagaatgcccaaggggggcattgcttaggaaacacagatcttgga 320

                                                                       
Query: 121 aggacaaataagtaatcaaataaacttaagaatgttttctctcccttagtgaaaccttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggacaaataagtaatcaaataaacttaagaatgttttctctcccttagtgaaaccttta 380

                                                                       
Query: 181 aatggaacagctcaaaaaaagttccagtggaacagcctcagagcagttagtggcagggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatggaacagctcaaaaaaagttccagtggaacagcctcagagcagttagtggcagggca 440

                                                                       
Query: 241 tgaggcgcccactacccgtccaatcacagcagggttagaactaacattgcatgcagtccg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaggcgcccactacccgtccaatcacagcagggttagaactaacattgcatgcagtccg 500

                                                                       
Query: 301 cccgcgtgattggctgaacatctgtaagtgcttaatggttagacaaatagcagcccagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccgcgtgattggctgaacatctgtaagtgcttaatggttagacaaatagcagcccagag 560

                                                                       
Query: 361 ggaggagggggtcagatggaggagacatcaataatacagatgtgggacattattttttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaggagggggtcagatggaggagacatcaataatacagatgtgggacattattttttct 620

                                                          
Query: 421 ctgcaagggagaactgctgattcacaggactgctgccagccccaagg 467
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgcaagggagaactgctgattcacaggactgctgccagccccaagg 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)