BAC Information

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BAC

Clone NameMSMg01-421H03
Chromosome13 (Build37)
Map Location 58,967,774 - 59,143,421
singlet/doubletdoublet
Overlap geneNtrk2
Upstream geneSpock1, Klhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1, Kif27, Hnrpk, Rmi1, LOC100041086, Slc28a3, LOC100041510, LOC435361
Downstream geneLOC100041533, Agtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421H03.T7 (MSMg01no421_h03.b1)MSMg01-421H03.TJ (MSMg01no421_h03.g1)
ACCAG516071AG516072
length828816
length of high quality
(start - end)		275 (47 - 321)444 (72 - 515)
definitionCHROMAT_FILE: MSMg01no421_h03.b1 PHD_FILE: MSMg01no421_h03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:37 2005CHROMAT_FILE: MSMg01no421_h03.g1 PHD_FILE: MSMg01no421_h03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,143,147 - 59,143,421)(58,967,774 - 58,968,217)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAAATCCGCGGAAT
TCAGACACTTTTTTCGTATAAAACTTAAGTCTGCTCTCAGCAAAGTGTTT
GCTGAACCCATGCAGCAGCCACCAAGTCTGCTAAGACTCCACCTGTGTGT
GTCTCCAACTCTTTTAATTTAATACCTTGAGATAGTCGCTTGGCTTCCCT
GGGTCTTAGATTTCTCATCCATAAAATACGAGACTTTATGTATATGATTT
TAAAGGTCTCTCTCAGATTCAGCGCTCCTTGGTTCTAGAAATAAAGCGGA
GTTAGCCAGGGAGGGACACAGATTCTACAAAGCAGACTTGTGGCTTCATT
TGAAAACCACATAAAAAAAAAAAAAAAAAATAATCATAAGAAGAAGACGA
AAAGAAAAAGAATAAGAAAAAGAATAAAATCTTCTTGCATTCACAGTACA
AGAAAAAAGGTTGTAGGAAGGGTAGTTATTGAAATGCATGTTAGATGGAG
CCAAAAATAGCTGATGCTTCGACAGTTAATGCCAGGGAAAGCGCTATGGA
TCGTTTTCTTGGTATCCTGATAACCTCTATGTTATAGTAATTGGTTTTTG
ATTAACAGATTGTGTTACTTCACTTTCTCTCCTATCGTAATGTATGCACA
TTATGCCCTGGTCTTAATACTCCCGGTTAAAAAAATTAAATAAGGTCTTG
AATAAAATCCCCTTTCCCTCTGACTAAATGAAAGATCCTATCCCTGTTTA
TGTAACATAATCTACCGTTAACCCCTCTGTGAATCTCCCTATTCTAATTC
TACGCCGTTTTTTCTTCTCCCCACTCTG

ATATAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGCTCCCTTATTCAGAAGCAGTTGTCTCC
TATGCAAAAACTCGCGTCAGGGACAAACTATAAATATCGGAAGTGTTTTC
CCACAGTTTCTCCCAGTGCTGTTTTGTCAAAAGATTCATGATGTGGGGTG
AACTGGCGCTCTCTCTGCTGCACTTAGAAAGGCCCCAAAGTAGCAGATCT
AGGGACGGAGTGTTCAAGTCAAGGAACACAGCGAGAGTAAATTTCTCCTG
GAGTTCCACAGAAGAGTAGAATGTGAAGCCCGTGCTGTTTCAATTGCCAG
GACCTGTTCCTTGTCCTGGGGCTAAAACTACAGAGCCATAGATTCTTTCT
TGCCTTGAGAAACCAAGGAGAAGATGGTTTGGGCACATGCGTTAGATAAC
CAGAGTAATTAAGATTCATCCTTATAGCTCTTCGAATCTCCAGAGTACTA
AGGTTAATTGGTTACACCTTCCTTGCTCATTCTTGTGAAGACTCCTTTCT
AGCAGGACAGAAGAGACTCATAGCTCCCTGCAAATTGATGGTTGGCATAC
TTTGTGCCTTAACTCCCCCTTCCTCCTCCGTAGTATCATCCTGGGCCTTT
ATAAGCTGTTTGCTCTTCTTTTTTTAAACATTGGTTAATTTCAACTTTAA
TATTGTACCCTTATGAATTACATAAAACTCGGGTCTATTTTCCTCCTTCT
TTCCTGCCAAGTCGTATTTACTACATTATTTCTATTTATTTATATCTCAT
GCGATTTCTTTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_h03.b1 MSMg01no421_h03.b1 CHROMAT_FILE:
MSMg01no421_h03.b1 PHD_FILE: MSMg01no421_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:37 2005
         (275 letters)



>mm_chr13_59143095_59143769
          Length = 675

 Score =  478 bits (247), Expect = e-139
 Identities = 268/275 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattcagacacttttttcgtataaaacttaagtctgctctcagcaaagtgtttgctgaa 60
           ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gaattcagacacttttaaagtataaaacttaagtctgctctcagcaaagtgtttgctgaa 268

                                                                       
Query: 61  cccatgcagcagccaccaagtctgctaagactccacctgtgtgtgtctccaactctttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cccatgcagcagccaccaagtctgctaagactccacctgtgtgtgtctccaactctttta 208

                                                                       
Query: 121 atttaataccttgagatagtcgcttggcttccctgggtcttagatttctcatccataaaa 180
           ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 207 atttaatactttgagatagttgcttggcttccctgggtcttagatttctcatccataaaa 148

                                                                       
Query: 181 tacgagactttatgtatatgattttaaaggtctctctcagattcagcgctccttggttct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 147 tacgagactttatgtatatgattttaaaggtctctctcagattcagcgctacttggttct 88

                                              
Query: 241 agaaataaagcggagttagccagggagggacacag 275
           ||||||||| |||||||||||||||||||||||||
Sbjct: 87  agaaataaaccggagttagccagggagggacacag 53


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no421_h03.g1 MSMg01no421_h03.g1 CHROMAT_FILE:
MSMg01no421_h03.g1 PHD_FILE: MSMg01no421_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:37 2005
         (444 letters)



>mm_chr13_58967574_58968417
          Length = 844

 Score =  797 bits (412), Expect = 0.0
 Identities = 436/444 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctcccttattcagaagcagttgtctcctatgcaaaaactcgcgtcagggacaaactat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctcccttattcagaagcagttgtctcctatgcaaaaactcgcgtcagggacaaactat 260

                                                                       
Query: 61  aaatatcggaagtgttttcccacagtttctcccagtgctgttttgtcaaaagattcatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatatcggaagtgttttcccacagtttctcccagtgctgttttgtcaaaagattcatga 320

                                                                       
Query: 121 tgtggggtgaactggcgctctctctgctgcacttagaaaggccccaaagtagcagatcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtggggtgaactggcgctctctctgctgcacttagaaaggccccaaagtagcagatcta 380

                                                                       
Query: 181 gggacggagtgttcaagtcaaggaacacagcgagagtaaatttctcctggagttccacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggacggagtgttcaagtcaaggaacacagcgagagtaaatttctcctggagttccacag 440

                                                                       
Query: 241 aagagtagaatgtgaagcccgtgctgtttcaattgccaggacctgttccttgtcctgggg 300
           |||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||
Sbjct: 441 aagagtagaatgtgaagcccatgctgtttcaatcaccaggacctgttccttgtcctgggg 500

                                                                       
Query: 301 ctaaaactacagagccatagattctttcttgccttgagaaaccaaggagaagatggtttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaaaactacagagccatagattctttcttgccttgagaaaccaaggagaagatggtttg 560

                                                                       
Query: 361 ggcacatgcgttagataaccagagtaattaagattcatccttatagctcttcgaatctcc 420
           |||||| || ||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct: 561 ggcacaagccttagataaccagagtaattaagattcatccttacagttcttctaatctcc 620

                                   
Query: 421 agagtactaaggttaattggttac 444
           ||||||||||||||||||||||||
Sbjct: 621 agagtactaaggttaattggttac 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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